Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-216]:
1gx3a_PU0_1-216
CI=4.62


[217-276 ]:
1gx3a_PU0_217-276
CI=2.49


Level 1
PU
Molecule needs Java 1.4 Structure


[1-216]:
1gx3a_PU1_1-216
CI=4.62


[217-239]:
1gx3a_PU1_217-239
CI=2.72


[240-276 ]:
1gx3a_PU1_240-276
CI=1.16


Level 2
PU
Molecule needs Java 1.4 Structure


[1-86]:
1gx3a_PU2_1-86
CI=1.97


[87-185]:
1gx3a_PU2_87-185
CI=4.43


[186-216]:
1gx3a_PU2_186-216
CI=0.61


[217-239]:
1gx3a_PU2_217-239
CI=2.72


[240-276 ]:
1gx3a_PU2_240-276
CI=1.16


Level 3
PU
Molecule needs Java 1.4 Structure


[1-36]:
1gx3a_PU3_1-36
CI=0.83


[37-77]:
1gx3a_PU3_37-77
CI=2.22


[78-86]:
1gx3a_PU3_78-86
CI=0.00


[87-185]:
1gx3a_PU3_87-185
CI=4.43


[186-216]:
1gx3a_PU3_186-216
CI=0.61


[217-239]:
1gx3a_PU3_217-239
CI=2.72


[240-276 ]:
1gx3a_PU3_240-276
CI=1.16


Level 4
PU
Molecule needs Java 1.4 Structure


[1-18]:
1gx3a_PU4_1-18
CI=0.50


[19-36]:
1gx3a_PU4_19-36
CI=0.11


[37-77]:
1gx3a_PU4_37-77
CI=2.22


[78-86]:
1gx3a_PU4_78-86
CI=0.00


[87-185]:
1gx3a_PU4_87-185
CI=4.43


[186-216]:
1gx3a_PU4_186-216
CI=0.61


[217-239]:
1gx3a_PU4_217-239
CI=2.72


[240-276 ]:
1gx3a_PU4_240-276
CI=1.16


Level 5
PU
Molecule needs Java 1.4 Structure


[1-18]:
1gx3a_PU5_1-18
CI=0.50


[19-36]:
1gx3a_PU5_19-36
CI=0.11


[37-77]:
1gx3a_PU5_37-77
CI=2.22


[78-86]:
1gx3a_PU5_78-86
CI=0.00


[87-185]:
1gx3a_PU5_87-185
CI=4.43


[186-216]:
1gx3a_PU5_186-216
CI=0.61


[217-239]:
1gx3a_PU5_217-239
CI=2.72


[240-260]:
1gx3a_PU5_240-260
CI=0.70


[261-276 ]:
1gx3a_PU5_261-276
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-18]:
1gx3a_PU6_1-18
CI=0.50


[19-36]:
1gx3a_PU6_19-36
CI=0.11


[37-77]:
1gx3a_PU6_37-77
CI=2.22


[78-86]:
1gx3a_PU6_78-86
CI=0.00


[87-117]:
1gx3a_PU6_87-117
CI=2.82


[118-159]:
1gx3a_PU6_118-159
CI=2.73


[160-185]:
1gx3a_PU6_160-185
CI=2.05


[186-216]:
1gx3a_PU6_186-216
CI=0.61


[217-239]:
1gx3a_PU6_217-239
CI=2.72


[240-260]:
1gx3a_PU6_240-260
CI=0.70


[261-276 ]:
1gx3a_PU6_261-276
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-18]:
1gx3a_PU7_1-18
CI=0.50


[19-36]:
1gx3a_PU7_19-36
CI=0.11


[37-77]:
1gx3a_PU7_37-77
CI=2.22


[78-86]:
1gx3a_PU7_78-86
CI=0.00


[87-117]:
1gx3a_PU7_87-117
CI=2.82


[118-142]:
1gx3a_PU7_118-142
CI=2.11


[143-159]:
1gx3a_PU7_143-159
CI=1.98


[160-185]:
1gx3a_PU7_160-185
CI=2.05


[186-216]:
1gx3a_PU7_186-216
CI=0.61


[217-239]:
1gx3a_PU7_217-239
CI=2.72


[240-260]:
1gx3a_PU7_240-260
CI=0.70


[261-276 ]:
1gx3a_PU7_261-276
CI=0.00


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-18]:
1gx3a_PU_1-18
CI=0.50


[19-36]:
1gx3a_PU_19-36
CI=0.11


[37-53]:
1gx3a_PU_37-53
CI=0.32


[54-77]:
1gx3a_PU_54-77
CI=1.17


[78-86]:
1gx3a_PU_78-86
CI=0.00


[87-117]:
1gx3a_PU_87-117
CI=2.82


[118-142]:
1gx3a_PU_118-142
CI=2.11


[143-159]:
1gx3a_PU_143-159
CI=1.98


[160-185]:
1gx3a_PU_160-185
CI=2.05


[186-216]:
1gx3a_PU_186-216
CI=0.61


[217-239]:
1gx3a_PU_217-239
CI=2.72


[240-260]:
1gx3a_PU_240-260
CI=0.70


[261-276 ]:
1gx3a_PU_261-276
CI=0.00