Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-92]:
1gxra_PU0_1-92
CI=2.28


[93-224]:
1gxra_PU0_93-224
CI=5.48


[225-335 ]:
1gxra_PU0_225-335
CI=5.93


Level 1
PU
Molecule needs Java 1.4 Structure


[1-47]:
1gxra_PU1_1-47
CI=0.93


[48-92]:
1gxra_PU1_48-92
CI=3.55


[93-224]:
1gxra_PU1_93-224
CI=5.48


[225-335 ]:
1gxra_PU1_225-335
CI=5.93


Level 2
PU
Molecule needs Java 1.4 Structure


[1-27]:
1gxra_PU2_1-27
CI=1.20


[28-47]:
1gxra_PU2_28-47
CI=0.18


[48-92]:
1gxra_PU2_48-92
CI=3.55


[93-224]:
1gxra_PU2_93-224
CI=5.48


[225-335 ]:
1gxra_PU2_225-335
CI=5.93


Level 3
PU
Molecule needs Java 1.4 Structure


[1-27]:
1gxra_PU3_1-27
CI=1.20


[28-47]:
1gxra_PU3_28-47
CI=0.18


[48-92]:
1gxra_PU3_48-92
CI=3.55


[93-178]:
1gxra_PU3_93-178
CI=5.06


[179-224]:
1gxra_PU3_179-224
CI=4.15


[225-335 ]:
1gxra_PU3_225-335
CI=5.93


Level 4
PU
Molecule needs Java 1.4 Structure


[1-27]:
1gxra_PU4_1-27
CI=1.20


[28-47]:
1gxra_PU4_28-47
CI=0.18


[48-92]:
1gxra_PU4_48-92
CI=3.55


[93-178]:
1gxra_PU4_93-178
CI=5.06


[179-224]:
1gxra_PU4_179-224
CI=4.15


[225-302]:
1gxra_PU4_225-302
CI=5.63


[303-335 ]:
1gxra_PU4_303-335
CI=3.30


Level 5
PU
Molecule needs Java 1.4 Structure


[1-27]:
1gxra_PU5_1-27
CI=1.20


[28-47]:
1gxra_PU5_28-47
CI=0.18


[48-92]:
1gxra_PU5_48-92
CI=3.55


[93-136]:
1gxra_PU5_93-136
CI=3.72


[137-178]:
1gxra_PU5_137-178
CI=3.76


[179-224]:
1gxra_PU5_179-224
CI=4.15


[225-302]:
1gxra_PU5_225-302
CI=5.63


[303-335 ]:
1gxra_PU5_303-335
CI=3.30


Level 6
PU
Molecule needs Java 1.4 Structure


[1-27]:
1gxra_PU6_1-27
CI=1.20


[28-47]:
1gxra_PU6_28-47
CI=0.18


[48-92]:
1gxra_PU6_48-92
CI=3.55


[93-136]:
1gxra_PU6_93-136
CI=3.72


[137-178]:
1gxra_PU6_137-178
CI=3.76


[179-224]:
1gxra_PU6_179-224
CI=4.15


[225-260]:
1gxra_PU6_225-260
CI=3.63


[261-302]:
1gxra_PU6_261-302
CI=4.21


[303-335 ]:
1gxra_PU6_303-335
CI=3.30


Level 7
PU
Molecule needs Java 1.4 Structure


[1-27]:
1gxra_PU7_1-27
CI=1.20


[28-47]:
1gxra_PU7_28-47
CI=0.18


[48-92]:
1gxra_PU7_48-92
CI=3.55


[93-118]:
1gxra_PU7_93-118
CI=2.55


[119-136]:
1gxra_PU7_119-136
CI=2.59


[137-178]:
1gxra_PU7_137-178
CI=3.76


[179-224]:
1gxra_PU7_179-224
CI=4.15


[225-260]:
1gxra_PU7_225-260
CI=3.63


[261-302]:
1gxra_PU7_261-302
CI=4.21


[303-335 ]:
1gxra_PU7_303-335
CI=3.30


Level 8
PU
Molecule needs Java 1.4 Structure


[1-27]:
1gxra_PU8_1-27
CI=1.20


[28-47]:
1gxra_PU8_28-47
CI=0.18


[48-92]:
1gxra_PU8_48-92
CI=3.55


[93-118]:
1gxra_PU8_93-118
CI=2.55


[119-136]:
1gxra_PU8_119-136
CI=2.59


[137-178]:
1gxra_PU8_137-178
CI=3.76


[179-224]:
1gxra_PU8_179-224
CI=4.15


[225-244]:
1gxra_PU8_225-244
CI=2.44


[245-260]:
1gxra_PU8_245-260
CI=2.20


[261-302]:
1gxra_PU8_261-302
CI=4.21


[303-335 ]:
1gxra_PU8_303-335
CI=3.30


Level 9
PU
Molecule needs Java 1.4 Structure


[1-27]:
1gxra_PU9_1-27
CI=1.20


[28-47]:
1gxra_PU9_28-47
CI=0.18


[48-71]:
1gxra_PU9_48-71
CI=2.51


[72-92]:
1gxra_PU9_72-92
CI=2.07


[93-118]:
1gxra_PU9_93-118
CI=2.55


[119-136]:
1gxra_PU9_119-136
CI=2.59


[137-178]:
1gxra_PU9_137-178
CI=3.76


[179-224]:
1gxra_PU9_179-224
CI=4.15


[225-244]:
1gxra_PU9_225-244
CI=2.44


[245-260]:
1gxra_PU9_245-260
CI=2.20


[261-302]:
1gxra_PU9_261-302
CI=4.21


[303-335 ]:
1gxra_PU9_303-335
CI=3.30


Final level 10

PU
Molecule needs Java 1.4 Structure


[1-27]:
1gxra_PU_1-27
CI=1.20


[28-47]:
1gxra_PU_28-47
CI=0.18


[48-71]:
1gxra_PU_48-71
CI=2.51


[72-92]:
1gxra_PU_72-92
CI=2.07


[93-118]:
1gxra_PU_93-118
CI=2.55


[119-136]:
1gxra_PU_119-136
CI=2.59


[137-178]:
1gxra_PU_137-178
CI=3.76


[179-202]:
1gxra_PU_179-202
CI=2.91


[203-224]:
1gxra_PU_203-224
CI=2.74


[225-244]:
1gxra_PU_225-244
CI=2.44


[245-260]:
1gxra_PU_245-260
CI=2.20


[261-302]:
1gxra_PU_261-302
CI=4.21


[303-335 ]:
1gxra_PU_303-335
CI=3.30