Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-47]:
1gxua_PU0_1-47
CI=2.58


[48-69]:
1gxua_PU0_48-69
CI=0.17


[70-88 ]:
1gxua_PU0_70-88
CI=0.00


Final level 1

PU
Molecule needs Java 1.4 Structure


[1-19]:
1gxua_PU_1-19
CI=0.00


[20-47]:
1gxua_PU_20-47
CI=2.10


[48-69]:
1gxua_PU_48-69
CI=0.17


[70-88 ]:
1gxua_PU_70-88
CI=0.00