Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-118]:
1gyha_PU0_1-118
CI=4.73


[119-310]:
1gyha_PU0_119-310
CI=5.31


[311-318 ]:
1gyha_PU0_311-318
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-118]:
1gyha_PU1_1-118
CI=4.73


[119-189]:
1gyha_PU1_119-189
CI=3.78


[190-310]:
1gyha_PU1_190-310
CI=4.91


[311-318 ]:
1gyha_PU1_311-318
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-44]:
1gyha_PU2_1-44
CI=3.50


[45-118]:
1gyha_PU2_45-118
CI=3.90


[119-189]:
1gyha_PU2_119-189
CI=3.78


[190-310]:
1gyha_PU2_190-310
CI=4.91


[311-318 ]:
1gyha_PU2_311-318
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-44]:
1gyha_PU3_1-44
CI=3.50


[45-118]:
1gyha_PU3_45-118
CI=3.90


[119-189]:
1gyha_PU3_119-189
CI=3.78


[190-250]:
1gyha_PU3_190-250
CI=4.09


[251-310]:
1gyha_PU3_251-310
CI=3.54


[311-318 ]:
1gyha_PU3_311-318
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-44]:
1gyha_PU4_1-44
CI=3.50


[45-118]:
1gyha_PU4_45-118
CI=3.90


[119-189]:
1gyha_PU4_119-189
CI=3.78


[190-250]:
1gyha_PU4_190-250
CI=4.09


[251-292]:
1gyha_PU4_251-292
CI=3.48


[293-310]:
1gyha_PU4_293-310
CI=1.25


[311-318 ]:
1gyha_PU4_311-318
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-44]:
1gyha_PU5_1-44
CI=3.50


[45-118]:
1gyha_PU5_45-118
CI=3.90


[119-173]:
1gyha_PU5_119-173
CI=3.68


[174-189]:
1gyha_PU5_174-189
CI=0.91


[190-250]:
1gyha_PU5_190-250
CI=4.09


[251-292]:
1gyha_PU5_251-292
CI=3.48


[293-310]:
1gyha_PU5_293-310
CI=1.25


[311-318 ]:
1gyha_PU5_311-318
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-44]:
1gyha_PU6_1-44
CI=3.50


[45-64]:
1gyha_PU6_45-64
CI=0.65


[65-118]:
1gyha_PU6_65-118
CI=4.09


[119-173]:
1gyha_PU6_119-173
CI=3.68


[174-189]:
1gyha_PU6_174-189
CI=0.91


[190-250]:
1gyha_PU6_190-250
CI=4.09


[251-292]:
1gyha_PU6_251-292
CI=3.48


[293-310]:
1gyha_PU6_293-310
CI=1.25


[311-318 ]:
1gyha_PU6_311-318
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-44]:
1gyha_PU7_1-44
CI=3.50


[45-64]:
1gyha_PU7_45-64
CI=0.65


[65-118]:
1gyha_PU7_65-118
CI=4.09


[119-173]:
1gyha_PU7_119-173
CI=3.68


[174-189]:
1gyha_PU7_174-189
CI=0.91


[190-226]:
1gyha_PU7_190-226
CI=3.53


[227-250]:
1gyha_PU7_227-250
CI=1.80


[251-292]:
1gyha_PU7_251-292
CI=3.48


[293-310]:
1gyha_PU7_293-310
CI=1.25


[311-318 ]:
1gyha_PU7_311-318
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-44]:
1gyha_PU8_1-44
CI=3.50


[45-64]:
1gyha_PU8_45-64
CI=0.65


[65-118]:
1gyha_PU8_65-118
CI=4.09


[119-155]:
1gyha_PU8_119-155
CI=3.36


[156-173]:
1gyha_PU8_156-173
CI=0.72


[174-189]:
1gyha_PU8_174-189
CI=0.91


[190-226]:
1gyha_PU8_190-226
CI=3.53


[227-250]:
1gyha_PU8_227-250
CI=1.80


[251-292]:
1gyha_PU8_251-292
CI=3.48


[293-310]:
1gyha_PU8_293-310
CI=1.25


[311-318 ]:
1gyha_PU8_311-318
CI=0.00


Level 9
PU
Molecule needs Java 1.4 Structure


[1-44]:
1gyha_PU9_1-44
CI=3.50


[45-64]:
1gyha_PU9_45-64
CI=0.65


[65-118]:
1gyha_PU9_65-118
CI=4.09


[119-155]:
1gyha_PU9_119-155
CI=3.36


[156-173]:
1gyha_PU9_156-173
CI=0.72


[174-189]:
1gyha_PU9_174-189
CI=0.91


[190-208]:
1gyha_PU9_190-208
CI=2.46


[209-226]:
1gyha_PU9_209-226
CI=1.66


[227-250]:
1gyha_PU9_227-250
CI=1.80


[251-292]:
1gyha_PU9_251-292
CI=3.48


[293-310]:
1gyha_PU9_293-310
CI=1.25


[311-318 ]:
1gyha_PU9_311-318
CI=0.00


Level 10
PU
Molecule needs Java 1.4 Structure


[1-44]:
1gyha_PU10_1-44
CI=3.50


[45-64]:
1gyha_PU10_45-64
CI=0.65


[65-96]:
1gyha_PU10_65-96
CI=3.28


[97-118]:
1gyha_PU10_97-118
CI=1.28


[119-155]:
1gyha_PU10_119-155
CI=3.36


[156-173]:
1gyha_PU10_156-173
CI=0.72


[174-189]:
1gyha_PU10_174-189
CI=0.91


[190-208]:
1gyha_PU10_190-208
CI=2.46


[209-226]:
1gyha_PU10_209-226
CI=1.66


[227-250]:
1gyha_PU10_227-250
CI=1.80


[251-292]:
1gyha_PU10_251-292
CI=3.48


[293-310]:
1gyha_PU10_293-310
CI=1.25


[311-318 ]:
1gyha_PU10_311-318
CI=0.00


Level 11
PU
Molecule needs Java 1.4 Structure


[1-44]:
1gyha_PU11_1-44
CI=3.50


[45-64]:
1gyha_PU11_45-64
CI=0.65


[65-96]:
1gyha_PU11_65-96
CI=3.28


[97-118]:
1gyha_PU11_97-118
CI=1.28


[119-155]:
1gyha_PU11_119-155
CI=3.36


[156-173]:
1gyha_PU11_156-173
CI=0.72


[174-189]:
1gyha_PU11_174-189
CI=0.91


[190-208]:
1gyha_PU11_190-208
CI=2.46


[209-226]:
1gyha_PU11_209-226
CI=1.66


[227-250]:
1gyha_PU11_227-250
CI=1.80


[251-276]:
1gyha_PU11_251-276
CI=1.89


[277-292]:
1gyha_PU11_277-292
CI=1.86


[293-310]:
1gyha_PU11_293-310
CI=1.25


[311-318 ]:
1gyha_PU11_311-318
CI=0.00


Level 12
PU
Molecule needs Java 1.4 Structure


[1-25]:
1gyha_PU12_1-25
CI=1.98


[26-44]:
1gyha_PU12_26-44
CI=2.18


[45-64]:
1gyha_PU12_45-64
CI=0.65


[65-96]:
1gyha_PU12_65-96
CI=3.28


[97-118]:
1gyha_PU12_97-118
CI=1.28


[119-155]:
1gyha_PU12_119-155
CI=3.36


[156-173]:
1gyha_PU12_156-173
CI=0.72


[174-189]:
1gyha_PU12_174-189
CI=0.91


[190-208]:
1gyha_PU12_190-208
CI=2.46


[209-226]:
1gyha_PU12_209-226
CI=1.66


[227-250]:
1gyha_PU12_227-250
CI=1.80


[251-276]:
1gyha_PU12_251-276
CI=1.89


[277-292]:
1gyha_PU12_277-292
CI=1.86


[293-310]:
1gyha_PU12_293-310
CI=1.25


[311-318 ]:
1gyha_PU12_311-318
CI=0.00


Final level 13

PU
Molecule needs Java 1.4 Structure


[1-25]:
1gyha_PU_1-25
CI=1.98


[26-44]:
1gyha_PU_26-44
CI=2.18


[45-64]:
1gyha_PU_45-64
CI=0.65


[65-96]:
1gyha_PU_65-96
CI=3.28


[97-118]:
1gyha_PU_97-118
CI=1.28


[119-138]:
1gyha_PU_119-138
CI=0.00


[139-155]:
1gyha_PU_139-155
CI=2.19


[156-173]:
1gyha_PU_156-173
CI=0.72


[174-189]:
1gyha_PU_174-189
CI=0.91


[190-208]:
1gyha_PU_190-208
CI=2.46


[209-226]:
1gyha_PU_209-226
CI=1.66


[227-250]:
1gyha_PU_227-250
CI=1.80


[251-276]:
1gyha_PU_251-276
CI=1.89


[277-292]:
1gyha_PU_277-292
CI=1.86


[293-310]:
1gyha_PU_293-310
CI=1.25


[311-318 ]:
1gyha_PU_311-318
CI=0.00