Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-62]:
1h03p_PU0_1-62
CI=4.67


[63-125 ]:
1h03p_PU0_63-125
CI=4.51


Level 1
PU
Molecule needs Java 1.4 Structure


[1-29]:
1h03p_PU1_1-29
CI=2.22


[30-62]:
1h03p_PU1_30-62
CI=2.72


[63-125 ]:
1h03p_PU1_63-125
CI=4.51


Level 2
PU
Molecule needs Java 1.4 Structure


[1-29]:
1h03p_PU2_1-29
CI=2.22


[30-62]:
1h03p_PU2_30-62
CI=2.72


[63-92]:
1h03p_PU2_63-92
CI=1.96


[93-125 ]:
1h03p_PU2_93-125
CI=2.72


Level 3
PU
Molecule needs Java 1.4 Structure


[1-29]:
1h03p_PU3_1-29
CI=2.22


[30-62]:
1h03p_PU3_30-62
CI=2.72


[63-92]:
1h03p_PU3_63-92
CI=1.96


[93-109]:
1h03p_PU3_93-109
CI=0.11


[110-125 ]:
1h03p_PU3_110-125
CI=0.00


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-29]:
1h03p_PU_1-29
CI=2.22


[30-46]:
1h03p_PU_30-46
CI=0.11


[47-62]:
1h03p_PU_47-62
CI=0.00


[63-92]:
1h03p_PU_63-92
CI=1.96


[93-109]:
1h03p_PU_93-109
CI=0.11


[110-125 ]:
1h03p_PU_110-125
CI=0.00