Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-46]:
1h05a_PU0_1-46
CI=3.03


[47-124]:
1h05a_PU0_47-124
CI=3.78


[125-138 ]:
1h05a_PU0_125-138
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-46]:
1h05a_PU1_1-46
CI=3.03


[47-88]:
1h05a_PU1_47-88
CI=2.06


[89-124]:
1h05a_PU1_89-124
CI=2.88


[125-138 ]:
1h05a_PU1_125-138
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-46]:
1h05a_PU2_1-46
CI=3.03


[47-63]:
1h05a_PU2_47-63
CI=0.31


[64-88]:
1h05a_PU2_64-88
CI=0.58


[89-124]:
1h05a_PU2_89-124
CI=2.88


[125-138 ]:
1h05a_PU2_125-138
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-24]:
1h05a_PU3_1-24
CI=0.78


[25-46]:
1h05a_PU3_25-46
CI=1.17


[47-63]:
1h05a_PU3_47-63
CI=0.31


[64-88]:
1h05a_PU3_64-88
CI=0.58


[89-124]:
1h05a_PU3_89-124
CI=2.88


[125-138 ]:
1h05a_PU3_125-138
CI=0.00


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-24]:
1h05a_PU_1-24
CI=0.78


[25-46]:
1h05a_PU_25-46
CI=1.17


[47-63]:
1h05a_PU_47-63
CI=0.31


[64-88]:
1h05a_PU_64-88
CI=0.58


[89-106]:
1h05a_PU_89-106
CI=0.52


[107-124]:
1h05a_PU_107-124
CI=0.31


[125-138 ]:
1h05a_PU_125-138
CI=0.00