Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-56]:
1h10a_PU0_1-56
CI=3.76


[57-115 ]:
1h10a_PU0_57-115
CI=2.99


Level 1
PU
Molecule needs Java 1.4 Structure


[1-56]:
1h10a_PU1_1-56
CI=3.76


[57-95]:
1h10a_PU1_57-95
CI=3.43


[96-115 ]:
1h10a_PU1_96-115
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-33]:
1h10a_PU2_1-33
CI=3.24


[34-56]:
1h10a_PU2_34-56
CI=1.81


[57-95]:
1h10a_PU2_57-95
CI=3.43


[96-115 ]:
1h10a_PU2_96-115
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-33]:
1h10a_PU3_1-33
CI=3.24


[34-56]:
1h10a_PU3_34-56
CI=1.81


[57-79]:
1h10a_PU3_57-79
CI=2.29


[80-95]:
1h10a_PU3_80-95
CI=0.23


[96-115 ]:
1h10a_PU3_96-115
CI=0.00


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-17]:
1h10a_PU_1-17
CI=0.00


[18-33]:
1h10a_PU_18-33
CI=0.00


[34-56]:
1h10a_PU_34-56
CI=1.81


[57-79]:
1h10a_PU_57-79
CI=2.29


[80-95]:
1h10a_PU_80-95
CI=0.23


[96-115 ]:
1h10a_PU_96-115
CI=0.00