Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-52]:
1h1na_PU0_1-52
CI=2.29


[53-199]:
1h1na_PU0_53-199
CI=3.70


[200-305 ]:
1h1na_PU0_200-305
CI=3.63


Level 1
PU
Molecule needs Java 1.4 Structure


[1-52]:
1h1na_PU1_1-52
CI=2.29


[53-199]:
1h1na_PU1_53-199
CI=3.70


[200-274]:
1h1na_PU1_200-274
CI=3.44


[275-305 ]:
1h1na_PU1_275-305
CI=2.33


Level 2
PU
Molecule needs Java 1.4 Structure


[1-52]:
1h1na_PU2_1-52
CI=2.29


[53-85]:
1h1na_PU2_53-85
CI=0.97


[86-199]:
1h1na_PU2_86-199
CI=3.88


[200-274]:
1h1na_PU2_200-274
CI=3.44


[275-305 ]:
1h1na_PU2_275-305
CI=2.33


Level 3
PU
Molecule needs Java 1.4 Structure


[1-52]:
1h1na_PU3_1-52
CI=2.29


[53-69]:
1h1na_PU3_53-69
CI=1.30


[70-85]:
1h1na_PU3_70-85
CI=0.00


[86-199]:
1h1na_PU3_86-199
CI=3.88


[200-274]:
1h1na_PU3_200-274
CI=3.44


[275-305 ]:
1h1na_PU3_275-305
CI=2.33


Level 4
PU
Molecule needs Java 1.4 Structure


[1-52]:
1h1na_PU4_1-52
CI=2.29


[53-69]:
1h1na_PU4_53-69
CI=1.30


[70-85]:
1h1na_PU4_70-85
CI=0.00


[86-165]:
1h1na_PU4_86-165
CI=3.14


[166-199]:
1h1na_PU4_166-199
CI=1.55


[200-274]:
1h1na_PU4_200-274
CI=3.44


[275-305 ]:
1h1na_PU4_275-305
CI=2.33


Level 5
PU
Molecule needs Java 1.4 Structure


[1-52]:
1h1na_PU5_1-52
CI=2.29


[53-69]:
1h1na_PU5_53-69
CI=1.30


[70-85]:
1h1na_PU5_70-85
CI=0.00


[86-165]:
1h1na_PU5_86-165
CI=3.14


[166-199]:
1h1na_PU5_166-199
CI=1.55


[200-218]:
1h1na_PU5_200-218
CI=1.57


[219-234]:
1h1na_PU5_219-234
CI=0.11


[235-274]:
1h1na_PU5_235-274
CI=2.01


[275-305 ]:
1h1na_PU5_275-305
CI=2.33


Level 6
PU
Molecule needs Java 1.4 Structure


[1-32]:
1h1na_PU6_1-32
CI=1.25


[33-52]:
1h1na_PU6_33-52
CI=0.09


[53-69]:
1h1na_PU6_53-69
CI=1.30


[70-85]:
1h1na_PU6_70-85
CI=0.00


[86-165]:
1h1na_PU6_86-165
CI=3.14


[166-199]:
1h1na_PU6_166-199
CI=1.55


[200-218]:
1h1na_PU6_200-218
CI=1.57


[219-234]:
1h1na_PU6_219-234
CI=0.11


[235-274]:
1h1na_PU6_235-274
CI=2.01


[275-305 ]:
1h1na_PU6_275-305
CI=2.33


Level 7
PU
Molecule needs Java 1.4 Structure


[1-32]:
1h1na_PU7_1-32
CI=1.25


[33-52]:
1h1na_PU7_33-52
CI=0.09


[53-69]:
1h1na_PU7_53-69
CI=1.30


[70-85]:
1h1na_PU7_70-85
CI=0.00


[86-104]:
1h1na_PU7_86-104
CI=0.30


[105-165]:
1h1na_PU7_105-165
CI=2.58


[166-199]:
1h1na_PU7_166-199
CI=1.55


[200-218]:
1h1na_PU7_200-218
CI=1.57


[219-234]:
1h1na_PU7_219-234
CI=0.11


[235-274]:
1h1na_PU7_235-274
CI=2.01


[275-305 ]:
1h1na_PU7_275-305
CI=2.33


Level 8
PU
Molecule needs Java 1.4 Structure


[1-32]:
1h1na_PU8_1-32
CI=1.25


[33-52]:
1h1na_PU8_33-52
CI=0.09


[53-69]:
1h1na_PU8_53-69
CI=1.30


[70-85]:
1h1na_PU8_70-85
CI=0.00


[86-104]:
1h1na_PU8_86-104
CI=0.30


[105-124]:
1h1na_PU8_105-124
CI=0.00


[125-147]:
1h1na_PU8_125-147
CI=0.24


[148-165]:
1h1na_PU8_148-165
CI=0.40


[166-199]:
1h1na_PU8_166-199
CI=1.55


[200-218]:
1h1na_PU8_200-218
CI=1.57


[219-234]:
1h1na_PU8_219-234
CI=0.11


[235-274]:
1h1na_PU8_235-274
CI=2.01


[275-305 ]:
1h1na_PU8_275-305
CI=2.33


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-32]:
1h1na_PU_1-32
CI=1.25


[33-52]:
1h1na_PU_33-52
CI=0.09


[53-69]:
1h1na_PU_53-69
CI=1.30


[70-85]:
1h1na_PU_70-85
CI=0.00


[86-104]:
1h1na_PU_86-104
CI=0.30


[105-124]:
1h1na_PU_105-124
CI=0.00


[125-147]:
1h1na_PU_125-147
CI=0.24


[148-165]:
1h1na_PU_148-165
CI=0.40


[166-199]:
1h1na_PU_166-199
CI=1.55


[200-218]:
1h1na_PU_200-218
CI=1.57


[219-234]:
1h1na_PU_219-234
CI=0.11


[235-255]:
1h1na_PU_235-255
CI=0.36


[256-274]:
1h1na_PU_256-274
CI=0.38


[275-305 ]:
1h1na_PU_275-305
CI=2.33