Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-50]:
1h2ca_PU0_1-50
CI=2.54


[51-107]:
1h2ca_PU0_51-107
CI=3.58


[108-124 ]:
1h2ca_PU0_108-124
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-32]:
1h2ca_PU1_1-32
CI=3.16


[33-50]:
1h2ca_PU1_33-50
CI=0.30


[51-107]:
1h2ca_PU1_51-107
CI=3.58


[108-124 ]:
1h2ca_PU1_108-124
CI=0.00


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-32]:
1h2ca_PU_1-32
CI=3.16


[33-50]:
1h2ca_PU_33-50
CI=0.30


[51-70]:
1h2ca_PU_51-70
CI=2.64


[71-107]:
1h2ca_PU_71-107
CI=0.98


[108-124 ]:
1h2ca_PU_108-124
CI=0.00