Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-78]:
1h4xa_PU0_1-78
CI=3.98


[79-110 ]:
1h4xa_PU0_79-110
CI=0.63


Level 1
PU
Molecule needs Java 1.4 Structure


[1-57]:
1h4xa_PU1_1-57
CI=3.51


[58-78]:
1h4xa_PU1_58-78
CI=0.69


[79-110 ]:
1h4xa_PU1_79-110
CI=0.63


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-16]:
1h4xa_PU_1-16
CI=2.44


[17-42]:
1h4xa_PU_17-42
CI=0.29


[43-57]:
1h4xa_PU_43-57
CI=0.00


[58-78]:
1h4xa_PU_58-78
CI=0.69


[79-110 ]:
1h4xa_PU_79-110
CI=0.63