Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-26]:
1h5ba_PU0_1-26
CI=1.87


[27-74]:
1h5ba_PU0_27-74
CI=4.02


[75-113 ]:
1h5ba_PU0_75-113
CI=2.36


Level 1
PU
Molecule needs Java 1.4 Structure


[1-26]:
1h5ba_PU1_1-26
CI=1.87


[27-50]:
1h5ba_PU1_27-50
CI=2.37


[51-74]:
1h5ba_PU1_51-74
CI=3.21


[75-113 ]:
1h5ba_PU1_75-113
CI=2.36


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-26]:
1h5ba_PU_1-26
CI=1.87


[27-50]:
1h5ba_PU_27-50
CI=2.37


[51-74]:
1h5ba_PU_51-74
CI=3.21


[75-91]:
1h5ba_PU_75-91
CI=0.00


[92-113 ]:
1h5ba_PU_92-113
CI=0.25