Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-17]:
1h6ha_PU0_1-17
CI=0.00


[18-143 ]:
1h6ha_PU0_18-143
CI=2.91


Level 1
PU
Molecule needs Java 1.4 Structure


[1-17]:
1h6ha_PU1_1-17
CI=0.00


[18-68]:
1h6ha_PU1_18-68
CI=3.18


[69-84]:
1h6ha_PU1_69-84
CI=1.70


[85-143 ]:
1h6ha_PU1_85-143
CI=0.78


Level 2
PU
Molecule needs Java 1.4 Structure


[1-17]:
1h6ha_PU2_1-17
CI=0.00


[18-68]:
1h6ha_PU2_18-68
CI=3.18


[69-84]:
1h6ha_PU2_69-84
CI=1.70


[85-118]:
1h6ha_PU2_85-118
CI=1.01


[119-143 ]:
1h6ha_PU2_119-143
CI=0.15


Level 3
PU
Molecule needs Java 1.4 Structure


[1-17]:
1h6ha_PU3_1-17
CI=0.00


[18-49]:
1h6ha_PU3_18-49
CI=3.24


[50-68]:
1h6ha_PU3_50-68
CI=0.00


[69-84]:
1h6ha_PU3_69-84
CI=1.70


[85-118]:
1h6ha_PU3_85-118
CI=1.01


[119-143 ]:
1h6ha_PU3_119-143
CI=0.15


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-17]:
1h6ha_PU_1-17
CI=0.00


[18-49]:
1h6ha_PU_18-49
CI=3.24


[50-68]:
1h6ha_PU_50-68
CI=0.00


[69-84]:
1h6ha_PU_69-84
CI=1.70


[85-102]:
1h6ha_PU_85-102
CI=0.10


[103-118]:
1h6ha_PU_103-118
CI=0.00


[119-143 ]:
1h6ha_PU_119-143
CI=0.15