Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-162]:
1h72c_PU0_1-162
CI=5.63


[163-288]:
1h72c_PU0_163-288
CI=2.84


[289-296 ]:
1h72c_PU0_289-296
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-162]:
1h72c_PU1_1-162
CI=5.63


[163-186]:
1h72c_PU1_163-186
CI=0.00


[187-226]:
1h72c_PU1_187-226
CI=1.14


[227-288]:
1h72c_PU1_227-288
CI=1.71


[289-296 ]:
1h72c_PU1_289-296
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-162]:
1h72c_PU2_1-162
CI=5.63


[163-186]:
1h72c_PU2_163-186
CI=0.00


[187-226]:
1h72c_PU2_187-226
CI=1.14


[227-264]:
1h72c_PU2_227-264
CI=1.57


[265-288]:
1h72c_PU2_265-288
CI=0.38


[289-296 ]:
1h72c_PU2_289-296
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-33]:
1h72c_PU3_1-33
CI=3.01


[34-81]:
1h72c_PU3_34-81
CI=2.96


[82-162]:
1h72c_PU3_82-162
CI=3.12


[163-186]:
1h72c_PU3_163-186
CI=0.00


[187-226]:
1h72c_PU3_187-226
CI=1.14


[227-264]:
1h72c_PU3_227-264
CI=1.57


[265-288]:
1h72c_PU3_265-288
CI=0.38


[289-296 ]:
1h72c_PU3_289-296
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-33]:
1h72c_PU4_1-33
CI=3.01


[34-81]:
1h72c_PU4_34-81
CI=2.96


[82-144]:
1h72c_PU4_82-144
CI=2.65


[145-162]:
1h72c_PU4_145-162
CI=2.61


[163-186]:
1h72c_PU4_163-186
CI=0.00


[187-226]:
1h72c_PU4_187-226
CI=1.14


[227-264]:
1h72c_PU4_227-264
CI=1.57


[265-288]:
1h72c_PU4_265-288
CI=0.38


[289-296 ]:
1h72c_PU4_289-296
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-33]:
1h72c_PU5_1-33
CI=3.01


[34-81]:
1h72c_PU5_34-81
CI=2.96


[82-100]:
1h72c_PU5_82-100
CI=0.69


[101-118]:
1h72c_PU5_101-118
CI=0.61


[119-144]:
1h72c_PU5_119-144
CI=1.74


[145-162]:
1h72c_PU5_145-162
CI=2.61


[163-186]:
1h72c_PU5_163-186
CI=0.00


[187-226]:
1h72c_PU5_187-226
CI=1.14


[227-264]:
1h72c_PU5_227-264
CI=1.57


[265-288]:
1h72c_PU5_265-288
CI=0.38


[289-296 ]:
1h72c_PU5_289-296
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-33]:
1h72c_PU6_1-33
CI=3.01


[34-81]:
1h72c_PU6_34-81
CI=2.96


[82-100]:
1h72c_PU6_82-100
CI=0.69


[101-118]:
1h72c_PU6_101-118
CI=0.61


[119-144]:
1h72c_PU6_119-144
CI=1.74


[145-162]:
1h72c_PU6_145-162
CI=2.61


[163-186]:
1h72c_PU6_163-186
CI=0.00


[187-203]:
1h72c_PU6_187-203
CI=0.00


[204-226]:
1h72c_PU6_204-226
CI=1.05


[227-264]:
1h72c_PU6_227-264
CI=1.57


[265-288]:
1h72c_PU6_265-288
CI=0.38


[289-296 ]:
1h72c_PU6_289-296
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-33]:
1h72c_PU7_1-33
CI=3.01


[34-81]:
1h72c_PU7_34-81
CI=2.96


[82-100]:
1h72c_PU7_82-100
CI=0.69


[101-118]:
1h72c_PU7_101-118
CI=0.61


[119-144]:
1h72c_PU7_119-144
CI=1.74


[145-162]:
1h72c_PU7_145-162
CI=2.61


[163-186]:
1h72c_PU7_163-186
CI=0.00


[187-203]:
1h72c_PU7_187-203
CI=0.00


[204-226]:
1h72c_PU7_204-226
CI=1.05


[227-244]:
1h72c_PU7_227-244
CI=0.41


[245-264]:
1h72c_PU7_245-264
CI=1.70


[265-288]:
1h72c_PU7_265-288
CI=0.38


[289-296 ]:
1h72c_PU7_289-296
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-33]:
1h72c_PU8_1-33
CI=3.01


[34-63]:
1h72c_PU8_34-63
CI=1.32


[64-81]:
1h72c_PU8_64-81
CI=0.30


[82-100]:
1h72c_PU8_82-100
CI=0.69


[101-118]:
1h72c_PU8_101-118
CI=0.61


[119-144]:
1h72c_PU8_119-144
CI=1.74


[145-162]:
1h72c_PU8_145-162
CI=2.61


[163-186]:
1h72c_PU8_163-186
CI=0.00


[187-203]:
1h72c_PU8_187-203
CI=0.00


[204-226]:
1h72c_PU8_204-226
CI=1.05


[227-244]:
1h72c_PU8_227-244
CI=0.41


[245-264]:
1h72c_PU8_245-264
CI=1.70


[265-288]:
1h72c_PU8_265-288
CI=0.38


[289-296 ]:
1h72c_PU8_289-296
CI=0.00


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-17]:
1h72c_PU_1-17
CI=0.00


[18-33]:
1h72c_PU_18-33
CI=0.00


[34-63]:
1h72c_PU_34-63
CI=1.32


[64-81]:
1h72c_PU_64-81
CI=0.30


[82-100]:
1h72c_PU_82-100
CI=0.69


[101-118]:
1h72c_PU_101-118
CI=0.61


[119-144]:
1h72c_PU_119-144
CI=1.74


[145-162]:
1h72c_PU_145-162
CI=2.61


[163-186]:
1h72c_PU_163-186
CI=0.00


[187-203]:
1h72c_PU_187-203
CI=0.00


[204-226]:
1h72c_PU_204-226
CI=1.05


[227-244]:
1h72c_PU_227-244
CI=0.41


[245-264]:
1h72c_PU_245-264
CI=1.70


[265-288]:
1h72c_PU_265-288
CI=0.38


[289-296 ]:
1h72c_PU_289-296
CI=0.00