Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-19]:
1h7ma_PU0_1-19
CI=0.29


[20-87]:
1h7ma_PU0_20-87
CI=4.64


[88-97 ]:
1h7ma_PU0_88-97
CI=0.52


Level 1
PU
Molecule needs Java 1.4 Structure


[1-19]:
1h7ma_PU1_1-19
CI=0.29


[20-63]:
1h7ma_PU1_20-63
CI=2.76


[64-87]:
1h7ma_PU1_64-87
CI=1.47


[88-97 ]:
1h7ma_PU1_88-97
CI=0.52


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-19]:
1h7ma_PU_1-19
CI=0.29


[20-38]:
1h7ma_PU_20-38
CI=0.48


[39-63]:
1h7ma_PU_39-63
CI=0.81


[64-87]:
1h7ma_PU_64-87
CI=1.47


[88-97 ]:
1h7ma_PU_88-97
CI=0.52