Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-27]:
1h8ua_PU0_1-27
CI=0.97


[28-105]:
1h8ua_PU0_28-105
CI=3.82


[106-115 ]:
1h8ua_PU0_106-115
CI=0.00


Final level 1

PU
Molecule needs Java 1.4 Structure


[1-27]:
1h8ua_PU_1-27
CI=0.97


[28-57]:
1h8ua_PU_28-57
CI=0.26


[58-74]:
1h8ua_PU_58-74
CI=0.44


[75-105]:
1h8ua_PU_75-105
CI=3.13


[106-115 ]:
1h8ua_PU_106-115
CI=0.00