Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-19]:
1hb6a_PU0_1-19
CI=0.00


[20-73]:
1hb6a_PU0_20-73
CI=2.50


[74-86 ]:
1hb6a_PU0_74-86
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-19]:
1hb6a_PU1_1-19
CI=0.00


[20-36]:
1hb6a_PU1_20-36
CI=0.10


[37-73]:
1hb6a_PU1_37-73
CI=1.22


[74-86 ]:
1hb6a_PU1_74-86
CI=0.00


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-19]:
1hb6a_PU_1-19
CI=0.00


[20-36]:
1hb6a_PU_20-36
CI=0.10


[37-57]:
1hb6a_PU_37-57
CI=0.79


[58-73]:
1hb6a_PU_58-73
CI=0.11


[74-86 ]:
1hb6a_PU_74-86
CI=0.00