Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-21]:
1hbka_PU0_1-21
CI=0.00


[22-76]:
1hbka_PU0_22-76
CI=2.47


[77-89 ]:
1hbka_PU0_77-89
CI=0.27


Level 1
PU
Molecule needs Java 1.4 Structure


[1-21]:
1hbka_PU1_1-21
CI=0.00


[22-39]:
1hbka_PU1_22-39
CI=0.00


[40-76]:
1hbka_PU1_40-76
CI=1.32


[77-89 ]:
1hbka_PU1_77-89
CI=0.27


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-21]:
1hbka_PU_1-21
CI=0.00


[22-39]:
1hbka_PU_22-39
CI=0.00


[40-60]:
1hbka_PU_40-60
CI=0.88


[61-76]:
1hbka_PU_61-76
CI=0.11


[77-89 ]:
1hbka_PU_77-89
CI=0.27