Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-55]:
1hfes_PU0_1-55
CI=0.44


[56-88 ]:
1hfes_PU0_56-88
CI=0.23


Level 1
PU
Molecule needs Java 1.4 Structure


[1-23]:
1hfes_PU1_1-23
CI=0.00


[24-55]:
1hfes_PU1_24-55
CI=0.69


[56-88 ]:
1hfes_PU1_56-88
CI=0.23


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-23]:
1hfes_PU_1-23
CI=0.00


[24-55]:
1hfes_PU_24-55
CI=0.69


[56-72]:
1hfes_PU_56-72
CI=0.00


[73-88 ]:
1hfes_PU_73-88
CI=0.00