Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-19]:
1hlqa_PU0_1-19
CI=1.36


[20-35]:
1hlqa_PU0_20-35
CI=1.02


[36-75 ]:
1hlqa_PU0_36-75
CI=4.15


Final level 1

PU
Molecule needs Java 1.4 Structure


[1-19]:
1hlqa_PU_1-19
CI=1.36


[20-35]:
1hlqa_PU_20-35
CI=1.02


[36-52]:
1hlqa_PU_36-52
CI=0.97


[53-75 ]:
1hlqa_PU_53-75
CI=0.65