Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-115]:
1hpca_PU0_1-115
CI=5.31


[116-131 ]:
1hpca_PU0_116-131
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-35]:
1hpca_PU1_1-35
CI=2.49


[36-87]:
1hpca_PU1_36-87
CI=4.31


[88-115]:
1hpca_PU1_88-115
CI=0.46


[116-131 ]:
1hpca_PU1_116-131
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-35]:
1hpca_PU2_1-35
CI=2.49


[36-71]:
1hpca_PU2_36-71
CI=3.72


[72-87]:
1hpca_PU2_72-87
CI=0.00


[88-115]:
1hpca_PU2_88-115
CI=0.46


[116-131 ]:
1hpca_PU2_116-131
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-18]:
1hpca_PU3_1-18
CI=1.34


[19-35]:
1hpca_PU3_19-35
CI=0.00


[36-71]:
1hpca_PU3_36-71
CI=3.72


[72-87]:
1hpca_PU3_72-87
CI=0.00


[88-115]:
1hpca_PU3_88-115
CI=0.46


[116-131 ]:
1hpca_PU3_116-131
CI=0.00


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-18]:
1hpca_PU_1-18
CI=1.34


[19-35]:
1hpca_PU_19-35
CI=0.00


[36-52]:
1hpca_PU_36-52
CI=0.10


[53-71]:
1hpca_PU_53-71
CI=2.95


[72-87]:
1hpca_PU_72-87
CI=0.00


[88-115]:
1hpca_PU_88-115
CI=0.46


[116-131 ]:
1hpca_PU_116-131
CI=0.00