Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-62]:
1htwa_PU0_1-62
CI=1.48


[63-123]:
1htwa_PU0_63-123
CI=3.28


[124-158 ]:
1htwa_PU0_124-158
CI=2.56


Level 1
PU
Molecule needs Java 1.4 Structure


[1-21]:
1htwa_PU1_1-21
CI=0.26


[22-38]:
1htwa_PU1_22-38
CI=0.11


[39-62]:
1htwa_PU1_39-62
CI=0.16


[63-123]:
1htwa_PU1_63-123
CI=3.28


[124-158 ]:
1htwa_PU1_124-158
CI=2.56


Level 2
PU
Molecule needs Java 1.4 Structure


[1-21]:
1htwa_PU2_1-21
CI=0.26


[22-38]:
1htwa_PU2_22-38
CI=0.11


[39-62]:
1htwa_PU2_39-62
CI=0.16


[63-85]:
1htwa_PU2_63-85
CI=2.62


[86-123]:
1htwa_PU2_86-123
CI=1.44


[124-158 ]:
1htwa_PU2_124-158
CI=2.56


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-21]:
1htwa_PU_1-21
CI=0.26


[22-38]:
1htwa_PU_22-38
CI=0.11


[39-62]:
1htwa_PU_39-62
CI=0.16


[63-85]:
1htwa_PU_63-85
CI=2.62


[86-107]:
1htwa_PU_86-107
CI=0.08


[108-123]:
1htwa_PU_108-123
CI=0.11


[124-158 ]:
1htwa_PU_124-158
CI=2.56