Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-61]:
1hufa_PU0_1-61
CI=2.04


[62-100]:
1hufa_PU0_62-100
CI=2.54


[101-123 ]:
1hufa_PU0_101-123
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-37]:
1hufa_PU1_1-37
CI=2.15


[38-61]:
1hufa_PU1_38-61
CI=0.30


[62-100]:
1hufa_PU1_62-100
CI=2.54


[101-123 ]:
1hufa_PU1_101-123
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-19]:
1hufa_PU2_1-19
CI=0.20


[20-37]:
1hufa_PU2_20-37
CI=2.38


[38-61]:
1hufa_PU2_38-61
CI=0.30


[62-100]:
1hufa_PU2_62-100
CI=2.54


[101-123 ]:
1hufa_PU2_101-123
CI=0.00


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-19]:
1hufa_PU_1-19
CI=0.20


[20-37]:
1hufa_PU_20-37
CI=2.38


[38-61]:
1hufa_PU_38-61
CI=0.30


[62-84]:
1hufa_PU_62-84
CI=0.31


[85-100]:
1hufa_PU_85-100
CI=2.21


[101-123 ]:
1hufa_PU_101-123
CI=0.00