Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-186]:
1hxha_PU0_1-186
CI=4.58


[187-217]:
1hxha_PU0_187-217
CI=1.96


[218-253 ]:
1hxha_PU0_218-253
CI=0.26


Level 1
PU
Molecule needs Java 1.4 Structure


[1-81]:
1hxha_PU1_1-81
CI=3.62


[82-186]:
1hxha_PU1_82-186
CI=4.25


[187-217]:
1hxha_PU1_187-217
CI=1.96


[218-253 ]:
1hxha_PU1_218-253
CI=0.26


Level 2
PU
Molecule needs Java 1.4 Structure


[1-81]:
1hxha_PU2_1-81
CI=3.62


[82-186]:
1hxha_PU2_82-186
CI=4.25


[187-217]:
1hxha_PU2_187-217
CI=1.96


[218-237]:
1hxha_PU2_218-237
CI=0.09


[238-253 ]:
1hxha_PU2_238-253
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-58]:
1hxha_PU3_1-58
CI=3.95


[59-81]:
1hxha_PU3_59-81
CI=0.65


[82-186]:
1hxha_PU3_82-186
CI=4.25


[187-217]:
1hxha_PU3_187-217
CI=1.96


[218-237]:
1hxha_PU3_218-237
CI=0.09


[238-253 ]:
1hxha_PU3_238-253
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-35]:
1hxha_PU4_1-35
CI=3.37


[36-58]:
1hxha_PU4_36-58
CI=1.86


[59-81]:
1hxha_PU4_59-81
CI=0.65


[82-186]:
1hxha_PU4_82-186
CI=4.25


[187-217]:
1hxha_PU4_187-217
CI=1.96


[218-237]:
1hxha_PU4_218-237
CI=0.09


[238-253 ]:
1hxha_PU4_238-253
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-35]:
1hxha_PU5_1-35
CI=3.37


[36-58]:
1hxha_PU5_36-58
CI=1.86


[59-81]:
1hxha_PU5_59-81
CI=0.65


[82-136]:
1hxha_PU5_82-136
CI=2.15


[137-160]:
1hxha_PU5_137-160
CI=2.31


[161-186]:
1hxha_PU5_161-186
CI=1.09


[187-217]:
1hxha_PU5_187-217
CI=1.96


[218-237]:
1hxha_PU5_218-237
CI=0.09


[238-253 ]:
1hxha_PU5_238-253
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-35]:
1hxha_PU6_1-35
CI=3.37


[36-58]:
1hxha_PU6_36-58
CI=1.86


[59-81]:
1hxha_PU6_59-81
CI=0.65


[82-115]:
1hxha_PU6_82-115
CI=0.94


[116-136]:
1hxha_PU6_116-136
CI=0.85


[137-160]:
1hxha_PU6_137-160
CI=2.31


[161-186]:
1hxha_PU6_161-186
CI=1.09


[187-217]:
1hxha_PU6_187-217
CI=1.96


[218-237]:
1hxha_PU6_218-237
CI=0.09


[238-253 ]:
1hxha_PU6_238-253
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-35]:
1hxha_PU7_1-35
CI=3.37


[36-58]:
1hxha_PU7_36-58
CI=1.86


[59-81]:
1hxha_PU7_59-81
CI=0.65


[82-99]:
1hxha_PU7_82-99
CI=0.10


[100-115]:
1hxha_PU7_100-115
CI=0.00


[116-136]:
1hxha_PU7_116-136
CI=0.85


[137-160]:
1hxha_PU7_137-160
CI=2.31


[161-186]:
1hxha_PU7_161-186
CI=1.09


[187-217]:
1hxha_PU7_187-217
CI=1.96


[218-237]:
1hxha_PU7_218-237
CI=0.09


[238-253 ]:
1hxha_PU7_238-253
CI=0.00


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-19]:
1hxha_PU_1-19
CI=0.30


[20-35]:
1hxha_PU_20-35
CI=0.67


[36-58]:
1hxha_PU_36-58
CI=1.86


[59-81]:
1hxha_PU_59-81
CI=0.65


[82-99]:
1hxha_PU_82-99
CI=0.10


[100-115]:
1hxha_PU_100-115
CI=0.00


[116-136]:
1hxha_PU_116-136
CI=0.85


[137-160]:
1hxha_PU_137-160
CI=2.31


[161-186]:
1hxha_PU_161-186
CI=1.09


[187-217]:
1hxha_PU_187-217
CI=1.96


[218-237]:
1hxha_PU_218-237
CI=0.09


[238-253 ]:
1hxha_PU_238-253
CI=0.00