Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-30]:
1hxra_PU0_1-30
CI=3.18


[31-107 ]:
1hxra_PU0_31-107
CI=4.93


Final level 1

PU
Molecule needs Java 1.4 Structure


[1-30]:
1hxra_PU_1-30
CI=3.18


[31-57]:
1hxra_PU_31-57
CI=2.53


[58-83]:
1hxra_PU_58-83
CI=1.96


[84-107 ]:
1hxra_PU_84-107
CI=1.97