Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-34]:
1hyva_PU0_1-34
CI=3.76


[35-82]:
1hyva_PU0_35-82
CI=1.82


[83-142 ]:
1hyva_PU0_83-142
CI=0.95


Level 1
PU
Molecule needs Java 1.4 Structure


[1-34]:
1hyva_PU1_1-34
CI=3.76


[35-82]:
1hyva_PU1_35-82
CI=1.82


[83-118]:
1hyva_PU1_83-118
CI=0.89


[119-142 ]:
1hyva_PU1_119-142
CI=0.78


Level 2
PU
Molecule needs Java 1.4 Structure


[1-34]:
1hyva_PU2_1-34
CI=3.76


[35-82]:
1hyva_PU2_35-82
CI=1.82


[83-99]:
1hyva_PU2_83-99
CI=0.00


[100-118]:
1hyva_PU2_100-118
CI=0.77


[119-142 ]:
1hyva_PU2_119-142
CI=0.78


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-34]:
1hyva_PU_1-34
CI=3.76


[35-53]:
1hyva_PU_35-53
CI=0.09


[54-82]:
1hyva_PU_54-82
CI=1.30


[83-99]:
1hyva_PU_83-99
CI=0.00


[100-118]:
1hyva_PU_100-118
CI=0.77


[119-142 ]:
1hyva_PU_119-142
CI=0.78