Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-39]:
1hz6a_PU0_1-39
CI=3.13


[40-67 ]:
1hz6a_PU0_40-67
CI=2.31


Final level 1

PU
Molecule needs Java 1.4 Structure


[1-18]:
1hz6a_PU_1-18
CI=0.00


[19-39]:
1hz6a_PU_19-39
CI=1.05


[40-67 ]:
1hz6a_PU_40-67
CI=2.31