Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-91]:
1i0da_PU0_1-91
CI=3.27


[92-217]:
1i0da_PU0_92-217
CI=3.99


[218-331 ]:
1i0da_PU0_218-331
CI=2.16


Level 1
PU
Molecule needs Java 1.4 Structure


[1-29]:
1i0da_PU1_1-29
CI=0.86


[30-45]:
1i0da_PU1_30-45
CI=0.79


[46-91]:
1i0da_PU1_46-91
CI=1.74


[92-217]:
1i0da_PU1_92-217
CI=3.99


[218-331 ]:
1i0da_PU1_218-331
CI=2.16


Level 2
PU
Molecule needs Java 1.4 Structure


[1-29]:
1i0da_PU2_1-29
CI=0.86


[30-45]:
1i0da_PU2_30-45
CI=0.79


[46-91]:
1i0da_PU2_46-91
CI=1.74


[92-217]:
1i0da_PU2_92-217
CI=3.99


[218-268]:
1i0da_PU2_218-268
CI=2.27


[269-285]:
1i0da_PU2_269-285
CI=0.54


[286-331 ]:
1i0da_PU2_286-331
CI=0.33


Level 3
PU
Molecule needs Java 1.4 Structure


[1-29]:
1i0da_PU3_1-29
CI=0.86


[30-45]:
1i0da_PU3_30-45
CI=0.79


[46-91]:
1i0da_PU3_46-91
CI=1.74


[92-217]:
1i0da_PU3_92-217
CI=3.99


[218-268]:
1i0da_PU3_218-268
CI=2.27


[269-285]:
1i0da_PU3_269-285
CI=0.54


[286-307]:
1i0da_PU3_286-307
CI=0.25


[308-331 ]:
1i0da_PU3_308-331
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-29]:
1i0da_PU4_1-29
CI=0.86


[30-45]:
1i0da_PU4_30-45
CI=0.79


[46-91]:
1i0da_PU4_46-91
CI=1.74


[92-166]:
1i0da_PU4_92-166
CI=3.33


[167-217]:
1i0da_PU4_167-217
CI=2.32


[218-268]:
1i0da_PU4_218-268
CI=2.27


[269-285]:
1i0da_PU4_269-285
CI=0.54


[286-307]:
1i0da_PU4_286-307
CI=0.25


[308-331 ]:
1i0da_PU4_308-331
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-29]:
1i0da_PU5_1-29
CI=0.86


[30-45]:
1i0da_PU5_30-45
CI=0.79


[46-91]:
1i0da_PU5_46-91
CI=1.74


[92-166]:
1i0da_PU5_92-166
CI=3.33


[167-217]:
1i0da_PU5_167-217
CI=2.32


[218-247]:
1i0da_PU5_218-247
CI=2.08


[248-268]:
1i0da_PU5_248-268
CI=0.42


[269-285]:
1i0da_PU5_269-285
CI=0.54


[286-307]:
1i0da_PU5_286-307
CI=0.25


[308-331 ]:
1i0da_PU5_308-331
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-29]:
1i0da_PU6_1-29
CI=0.86


[30-45]:
1i0da_PU6_30-45
CI=0.79


[46-91]:
1i0da_PU6_46-91
CI=1.74


[92-115]:
1i0da_PU6_92-115
CI=0.15


[116-131]:
1i0da_PU6_116-131
CI=1.96


[132-166]:
1i0da_PU6_132-166
CI=1.95


[167-217]:
1i0da_PU6_167-217
CI=2.32


[218-247]:
1i0da_PU6_218-247
CI=2.08


[248-268]:
1i0da_PU6_248-268
CI=0.42


[269-285]:
1i0da_PU6_269-285
CI=0.54


[286-307]:
1i0da_PU6_286-307
CI=0.25


[308-331 ]:
1i0da_PU6_308-331
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-29]:
1i0da_PU7_1-29
CI=0.86


[30-45]:
1i0da_PU7_30-45
CI=0.79


[46-65]:
1i0da_PU7_46-65
CI=0.00


[66-91]:
1i0da_PU7_66-91
CI=0.79


[92-115]:
1i0da_PU7_92-115
CI=0.15


[116-131]:
1i0da_PU7_116-131
CI=1.96


[132-166]:
1i0da_PU7_132-166
CI=1.95


[167-217]:
1i0da_PU7_167-217
CI=2.32


[218-247]:
1i0da_PU7_218-247
CI=2.08


[248-268]:
1i0da_PU7_248-268
CI=0.42


[269-285]:
1i0da_PU7_269-285
CI=0.54


[286-307]:
1i0da_PU7_286-307
CI=0.25


[308-331 ]:
1i0da_PU7_308-331
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-29]:
1i0da_PU8_1-29
CI=0.86


[30-45]:
1i0da_PU8_30-45
CI=0.79


[46-65]:
1i0da_PU8_46-65
CI=0.00


[66-91]:
1i0da_PU8_66-91
CI=0.79


[92-115]:
1i0da_PU8_92-115
CI=0.15


[116-131]:
1i0da_PU8_116-131
CI=1.96


[132-166]:
1i0da_PU8_132-166
CI=1.95


[167-187]:
1i0da_PU8_167-187
CI=0.27


[188-217]:
1i0da_PU8_188-217
CI=2.02


[218-247]:
1i0da_PU8_218-247
CI=2.08


[248-268]:
1i0da_PU8_248-268
CI=0.42


[269-285]:
1i0da_PU8_269-285
CI=0.54


[286-307]:
1i0da_PU8_286-307
CI=0.25


[308-331 ]:
1i0da_PU8_308-331
CI=0.00


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-29]:
1i0da_PU_1-29
CI=0.86


[30-45]:
1i0da_PU_30-45
CI=0.79


[46-65]:
1i0da_PU_46-65
CI=0.00


[66-91]:
1i0da_PU_66-91
CI=0.79


[92-115]:
1i0da_PU_92-115
CI=0.15


[116-131]:
1i0da_PU_116-131
CI=1.96


[132-150]:
1i0da_PU_132-150
CI=0.58


[151-166]:
1i0da_PU_151-166
CI=0.57


[167-187]:
1i0da_PU_167-187
CI=0.27


[188-217]:
1i0da_PU_188-217
CI=2.02


[218-247]:
1i0da_PU_218-247
CI=2.08


[248-268]:
1i0da_PU_248-268
CI=0.42


[269-285]:
1i0da_PU_269-285
CI=0.54


[286-307]:
1i0da_PU_286-307
CI=0.25


[308-331 ]:
1i0da_PU_308-331
CI=0.00