Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-128]:
1i12a_PU0_1-128
CI=3.76


[129-154 ]:
1i12a_PU0_129-154
CI=0.35


Level 1
PU
Molecule needs Java 1.4 Structure


[1-30]:
1i12a_PU1_1-30
CI=0.37


[31-57]:
1i12a_PU1_31-57
CI=1.20


[58-128]:
1i12a_PU1_58-128
CI=3.89


[129-154 ]:
1i12a_PU1_129-154
CI=0.35


Level 2
PU
Molecule needs Java 1.4 Structure


[1-30]:
1i12a_PU2_1-30
CI=0.37


[31-57]:
1i12a_PU2_31-57
CI=1.20


[58-75]:
1i12a_PU2_58-75
CI=2.40


[76-91]:
1i12a_PU2_76-91
CI=2.21


[92-128]:
1i12a_PU2_92-128
CI=0.91


[129-154 ]:
1i12a_PU2_129-154
CI=0.35


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-30]:
1i12a_PU_1-30
CI=0.37


[31-57]:
1i12a_PU_31-57
CI=1.20


[58-75]:
1i12a_PU_58-75
CI=2.40


[76-91]:
1i12a_PU_76-91
CI=2.21


[92-111]:
1i12a_PU_92-111
CI=0.54


[112-128]:
1i12a_PU_112-128
CI=0.64


[129-154 ]:
1i12a_PU_129-154
CI=0.35