Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-39]:
1i1wa_PU0_1-39
CI=1.76


[40-171]:
1i1wa_PU0_40-171
CI=3.41


[172-302 ]:
1i1wa_PU0_172-302
CI=4.41


Level 1
PU
Molecule needs Java 1.4 Structure


[1-39]:
1i1wa_PU1_1-39
CI=1.76


[40-171]:
1i1wa_PU1_40-171
CI=3.41


[172-266]:
1i1wa_PU1_172-266
CI=4.22


[267-302 ]:
1i1wa_PU1_267-302
CI=2.21


Level 2
PU
Molecule needs Java 1.4 Structure


[1-39]:
1i1wa_PU2_1-39
CI=1.76


[40-84]:
1i1wa_PU2_40-84
CI=2.50


[85-171]:
1i1wa_PU2_85-171
CI=2.61


[172-266]:
1i1wa_PU2_172-266
CI=4.22


[267-302 ]:
1i1wa_PU2_267-302
CI=2.21


Level 3
PU
Molecule needs Java 1.4 Structure


[1-20]:
1i1wa_PU3_1-20
CI=1.11


[21-39]:
1i1wa_PU3_21-39
CI=0.29


[40-84]:
1i1wa_PU3_40-84
CI=2.50


[85-171]:
1i1wa_PU3_85-171
CI=2.61


[172-266]:
1i1wa_PU3_172-266
CI=4.22


[267-302 ]:
1i1wa_PU3_267-302
CI=2.21


Level 4
PU
Molecule needs Java 1.4 Structure


[1-20]:
1i1wa_PU4_1-20
CI=1.11


[21-39]:
1i1wa_PU4_21-39
CI=0.29


[40-84]:
1i1wa_PU4_40-84
CI=2.50


[85-171]:
1i1wa_PU4_85-171
CI=2.61


[172-266]:
1i1wa_PU4_172-266
CI=4.22


[267-286]:
1i1wa_PU4_267-286
CI=2.60


[287-302 ]:
1i1wa_PU4_287-302
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-20]:
1i1wa_PU5_1-20
CI=1.11


[21-39]:
1i1wa_PU5_21-39
CI=0.29


[40-84]:
1i1wa_PU5_40-84
CI=2.50


[85-171]:
1i1wa_PU5_85-171
CI=2.61


[172-200]:
1i1wa_PU5_172-200
CI=0.97


[201-266]:
1i1wa_PU5_201-266
CI=4.13


[267-286]:
1i1wa_PU5_267-286
CI=2.60


[287-302 ]:
1i1wa_PU5_287-302
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-20]:
1i1wa_PU6_1-20
CI=1.11


[21-39]:
1i1wa_PU6_21-39
CI=0.29


[40-84]:
1i1wa_PU6_40-84
CI=2.50


[85-129]:
1i1wa_PU6_85-129
CI=0.59


[130-151]:
1i1wa_PU6_130-151
CI=1.02


[152-171]:
1i1wa_PU6_152-171
CI=0.35


[172-200]:
1i1wa_PU6_172-200
CI=0.97


[201-266]:
1i1wa_PU6_201-266
CI=4.13


[267-286]:
1i1wa_PU6_267-286
CI=2.60


[287-302 ]:
1i1wa_PU6_287-302
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-20]:
1i1wa_PU7_1-20
CI=1.11


[21-39]:
1i1wa_PU7_21-39
CI=0.29


[40-84]:
1i1wa_PU7_40-84
CI=2.50


[85-110]:
1i1wa_PU7_85-110
CI=0.28


[111-129]:
1i1wa_PU7_111-129
CI=0.10


[130-151]:
1i1wa_PU7_130-151
CI=1.02


[152-171]:
1i1wa_PU7_152-171
CI=0.35


[172-200]:
1i1wa_PU7_172-200
CI=0.97


[201-266]:
1i1wa_PU7_201-266
CI=4.13


[267-286]:
1i1wa_PU7_267-286
CI=2.60


[287-302 ]:
1i1wa_PU7_287-302
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-20]:
1i1wa_PU8_1-20
CI=1.11


[21-39]:
1i1wa_PU8_21-39
CI=0.29


[40-65]:
1i1wa_PU8_40-65
CI=1.58


[66-84]:
1i1wa_PU8_66-84
CI=0.29


[85-110]:
1i1wa_PU8_85-110
CI=0.28


[111-129]:
1i1wa_PU8_111-129
CI=0.10


[130-151]:
1i1wa_PU8_130-151
CI=1.02


[152-171]:
1i1wa_PU8_152-171
CI=0.35


[172-200]:
1i1wa_PU8_172-200
CI=0.97


[201-266]:
1i1wa_PU8_201-266
CI=4.13


[267-286]:
1i1wa_PU8_267-286
CI=2.60


[287-302 ]:
1i1wa_PU8_287-302
CI=0.00


Level 9
PU
Molecule needs Java 1.4 Structure


[1-20]:
1i1wa_PU9_1-20
CI=1.11


[21-39]:
1i1wa_PU9_21-39
CI=0.29


[40-65]:
1i1wa_PU9_40-65
CI=1.58


[66-84]:
1i1wa_PU9_66-84
CI=0.29


[85-110]:
1i1wa_PU9_85-110
CI=0.28


[111-129]:
1i1wa_PU9_111-129
CI=0.10


[130-151]:
1i1wa_PU9_130-151
CI=1.02


[152-171]:
1i1wa_PU9_152-171
CI=0.35


[172-200]:
1i1wa_PU9_172-200
CI=0.97


[201-241]:
1i1wa_PU9_201-241
CI=2.81


[242-266]:
1i1wa_PU9_242-266
CI=0.30


[267-286]:
1i1wa_PU9_267-286
CI=2.60


[287-302 ]:
1i1wa_PU9_287-302
CI=0.00


Final level 10

PU
Molecule needs Java 1.4 Structure


[1-20]:
1i1wa_PU_1-20
CI=1.11


[21-39]:
1i1wa_PU_21-39
CI=0.29


[40-65]:
1i1wa_PU_40-65
CI=1.58


[66-84]:
1i1wa_PU_66-84
CI=0.29


[85-110]:
1i1wa_PU_85-110
CI=0.28


[111-129]:
1i1wa_PU_111-129
CI=0.10


[130-151]:
1i1wa_PU_130-151
CI=1.02


[152-171]:
1i1wa_PU_152-171
CI=0.35


[172-200]:
1i1wa_PU_172-200
CI=0.97


[201-220]:
1i1wa_PU_201-220
CI=0.09


[221-241]:
1i1wa_PU_221-241
CI=0.44


[242-266]:
1i1wa_PU_242-266
CI=0.30


[267-286]:
1i1wa_PU_267-286
CI=2.60


[287-302 ]:
1i1wa_PU_287-302
CI=0.00