Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-136]:
1i24a_PU0_1-136
CI=2.66


[137-378]:
1i24a_PU0_137-378
CI=4.13


[379-392 ]:
1i24a_PU0_379-392
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-98]:
1i24a_PU1_1-98
CI=2.79


[99-136]:
1i24a_PU1_99-136
CI=0.99


[137-378]:
1i24a_PU1_137-378
CI=4.13


[379-392 ]:
1i24a_PU1_379-392
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-98]:
1i24a_PU2_1-98
CI=2.79


[99-120]:
1i24a_PU2_99-120
CI=1.60


[121-136]:
1i24a_PU2_121-136
CI=0.00


[137-378]:
1i24a_PU2_137-378
CI=4.13


[379-392 ]:
1i24a_PU2_379-392
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-98]:
1i24a_PU3_1-98
CI=2.79


[99-120]:
1i24a_PU3_99-120
CI=1.60


[121-136]:
1i24a_PU3_121-136
CI=0.00


[137-214]:
1i24a_PU3_137-214
CI=2.68


[215-230]:
1i24a_PU3_215-230
CI=1.15


[231-378]:
1i24a_PU3_231-378
CI=2.95


[379-392 ]:
1i24a_PU3_379-392
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-98]:
1i24a_PU4_1-98
CI=2.79


[99-120]:
1i24a_PU4_99-120
CI=1.60


[121-136]:
1i24a_PU4_121-136
CI=0.00


[137-152]:
1i24a_PU4_137-152
CI=0.00


[153-175]:
1i24a_PU4_153-175
CI=1.81


[176-214]:
1i24a_PU4_176-214
CI=0.68


[215-230]:
1i24a_PU4_215-230
CI=1.15


[231-378]:
1i24a_PU4_231-378
CI=2.95


[379-392 ]:
1i24a_PU4_379-392
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-32]:
1i24a_PU5_1-32
CI=2.74


[33-51]:
1i24a_PU5_33-51
CI=0.29


[52-98]:
1i24a_PU5_52-98
CI=0.49


[99-120]:
1i24a_PU5_99-120
CI=1.60


[121-136]:
1i24a_PU5_121-136
CI=0.00


[137-152]:
1i24a_PU5_137-152
CI=0.00


[153-175]:
1i24a_PU5_153-175
CI=1.81


[176-214]:
1i24a_PU5_176-214
CI=0.68


[215-230]:
1i24a_PU5_215-230
CI=1.15


[231-378]:
1i24a_PU5_231-378
CI=2.95


[379-392 ]:
1i24a_PU5_379-392
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-32]:
1i24a_PU6_1-32
CI=2.74


[33-51]:
1i24a_PU6_33-51
CI=0.29


[52-71]:
1i24a_PU6_52-71
CI=0.55


[72-98]:
1i24a_PU6_72-98
CI=0.42


[99-120]:
1i24a_PU6_99-120
CI=1.60


[121-136]:
1i24a_PU6_121-136
CI=0.00


[137-152]:
1i24a_PU6_137-152
CI=0.00


[153-175]:
1i24a_PU6_153-175
CI=1.81


[176-214]:
1i24a_PU6_176-214
CI=0.68


[215-230]:
1i24a_PU6_215-230
CI=1.15


[231-378]:
1i24a_PU6_231-378
CI=2.95


[379-392 ]:
1i24a_PU6_379-392
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-32]:
1i24a_PU7_1-32
CI=2.74


[33-51]:
1i24a_PU7_33-51
CI=0.29


[52-71]:
1i24a_PU7_52-71
CI=0.55


[72-98]:
1i24a_PU7_72-98
CI=0.42


[99-120]:
1i24a_PU7_99-120
CI=1.60


[121-136]:
1i24a_PU7_121-136
CI=0.00


[137-152]:
1i24a_PU7_137-152
CI=0.00


[153-175]:
1i24a_PU7_153-175
CI=1.81


[176-214]:
1i24a_PU7_176-214
CI=0.68


[215-230]:
1i24a_PU7_215-230
CI=1.15


[231-274]:
1i24a_PU7_231-274
CI=0.86


[275-291]:
1i24a_PU7_275-291
CI=0.11


[292-378]:
1i24a_PU7_292-378
CI=0.76


[379-392 ]:
1i24a_PU7_379-392
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-32]:
1i24a_PU8_1-32
CI=2.74


[33-51]:
1i24a_PU8_33-51
CI=0.29


[52-71]:
1i24a_PU8_52-71
CI=0.55


[72-98]:
1i24a_PU8_72-98
CI=0.42


[99-120]:
1i24a_PU8_99-120
CI=1.60


[121-136]:
1i24a_PU8_121-136
CI=0.00


[137-152]:
1i24a_PU8_137-152
CI=0.00


[153-175]:
1i24a_PU8_153-175
CI=1.81


[176-214]:
1i24a_PU8_176-214
CI=0.68


[215-230]:
1i24a_PU8_215-230
CI=1.15


[231-254]:
1i24a_PU8_231-254
CI=1.55


[255-274]:
1i24a_PU8_255-274
CI=0.00


[275-291]:
1i24a_PU8_275-291
CI=0.11


[292-378]:
1i24a_PU8_292-378
CI=0.76


[379-392 ]:
1i24a_PU8_379-392
CI=0.00


Level 9
PU
Molecule needs Java 1.4 Structure


[1-32]:
1i24a_PU9_1-32
CI=2.74


[33-51]:
1i24a_PU9_33-51
CI=0.29


[52-71]:
1i24a_PU9_52-71
CI=0.55


[72-98]:
1i24a_PU9_72-98
CI=0.42


[99-120]:
1i24a_PU9_99-120
CI=1.60


[121-136]:
1i24a_PU9_121-136
CI=0.00


[137-152]:
1i24a_PU9_137-152
CI=0.00


[153-175]:
1i24a_PU9_153-175
CI=1.81


[176-214]:
1i24a_PU9_176-214
CI=0.68


[215-230]:
1i24a_PU9_215-230
CI=1.15


[231-254]:
1i24a_PU9_231-254
CI=1.55


[255-274]:
1i24a_PU9_255-274
CI=0.00


[275-291]:
1i24a_PU9_275-291
CI=0.11


[292-362]:
1i24a_PU9_292-362
CI=0.90


[363-378]:
1i24a_PU9_363-378
CI=0.00


[379-392 ]:
1i24a_PU9_379-392
CI=0.00


Final level 10

PU
Molecule needs Java 1.4 Structure


[1-32]:
1i24a_PU_1-32
CI=2.74


[33-51]:
1i24a_PU_33-51
CI=0.29


[52-71]:
1i24a_PU_52-71
CI=0.55


[72-98]:
1i24a_PU_72-98
CI=0.42


[99-120]:
1i24a_PU_99-120
CI=1.60


[121-136]:
1i24a_PU_121-136
CI=0.00


[137-152]:
1i24a_PU_137-152
CI=0.00


[153-175]:
1i24a_PU_153-175
CI=1.81


[176-192]:
1i24a_PU_176-192
CI=0.75


[193-214]:
1i24a_PU_193-214
CI=0.51


[215-230]:
1i24a_PU_215-230
CI=1.15


[231-254]:
1i24a_PU_231-254
CI=1.55


[255-274]:
1i24a_PU_255-274
CI=0.00


[275-291]:
1i24a_PU_275-291
CI=0.11


[292-362]:
1i24a_PU_292-362
CI=0.90


[363-378]:
1i24a_PU_363-378
CI=0.00


[379-392 ]:
1i24a_PU_379-392
CI=0.00