Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-56]:
1i27a_PU0_1-56
CI=1.80


[57-73 ]:
1i27a_PU0_57-73
CI=1.97


Level 1
PU
Molecule needs Java 1.4 Structure


[1-39]:
1i27a_PU1_1-39
CI=1.21


[40-56]:
1i27a_PU1_40-56
CI=0.00


[57-73 ]:
1i27a_PU1_57-73
CI=1.97


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-23]:
1i27a_PU_1-23
CI=0.08


[24-39]:
1i27a_PU_24-39
CI=0.00


[40-56]:
1i27a_PU_40-56
CI=0.00


[57-73 ]:
1i27a_PU_57-73
CI=1.97