Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-109]:
1i2ka_PU0_1-109
CI=3.58


[110-269 ]:
1i2ka_PU0_110-269
CI=4.08


Level 1
PU
Molecule needs Java 1.4 Structure


[1-109]:
1i2ka_PU1_1-109
CI=3.58


[110-125]:
1i2ka_PU1_110-125
CI=0.00


[126-229]:
1i2ka_PU1_126-229
CI=3.50


[230-269 ]:
1i2ka_PU1_230-269
CI=2.14


Level 2
PU
Molecule needs Java 1.4 Structure


[1-22]:
1i2ka_PU2_1-22
CI=0.61


[23-83]:
1i2ka_PU2_23-83
CI=2.66


[84-109]:
1i2ka_PU2_84-109
CI=1.68


[110-125]:
1i2ka_PU2_110-125
CI=0.00


[126-229]:
1i2ka_PU2_126-229
CI=3.50


[230-269 ]:
1i2ka_PU2_230-269
CI=2.14


Level 3
PU
Molecule needs Java 1.4 Structure


[1-22]:
1i2ka_PU3_1-22
CI=0.61


[23-39]:
1i2ka_PU3_23-39
CI=0.85


[40-64]:
1i2ka_PU3_40-64
CI=0.44


[65-83]:
1i2ka_PU3_65-83
CI=0.47


[84-109]:
1i2ka_PU3_84-109
CI=1.68


[110-125]:
1i2ka_PU3_110-125
CI=0.00


[126-229]:
1i2ka_PU3_126-229
CI=3.50


[230-269 ]:
1i2ka_PU3_230-269
CI=2.14


Level 4
PU
Molecule needs Java 1.4 Structure


[1-22]:
1i2ka_PU4_1-22
CI=0.61


[23-39]:
1i2ka_PU4_23-39
CI=0.85


[40-64]:
1i2ka_PU4_40-64
CI=0.44


[65-83]:
1i2ka_PU4_65-83
CI=0.47


[84-109]:
1i2ka_PU4_84-109
CI=1.68


[110-125]:
1i2ka_PU4_110-125
CI=0.00


[126-141]:
1i2ka_PU4_126-141
CI=0.00


[142-159]:
1i2ka_PU4_142-159
CI=0.00


[160-229]:
1i2ka_PU4_160-229
CI=3.09


[230-269 ]:
1i2ka_PU4_230-269
CI=2.14


Level 5
PU
Molecule needs Java 1.4 Structure


[1-22]:
1i2ka_PU5_1-22
CI=0.61


[23-39]:
1i2ka_PU5_23-39
CI=0.85


[40-64]:
1i2ka_PU5_40-64
CI=0.44


[65-83]:
1i2ka_PU5_65-83
CI=0.47


[84-109]:
1i2ka_PU5_84-109
CI=1.68


[110-125]:
1i2ka_PU5_110-125
CI=0.00


[126-141]:
1i2ka_PU5_126-141
CI=0.00


[142-159]:
1i2ka_PU5_142-159
CI=0.00


[160-229]:
1i2ka_PU5_160-229
CI=3.09


[230-253]:
1i2ka_PU5_230-253
CI=1.96


[254-269 ]:
1i2ka_PU5_254-269
CI=0.22


Level 6
PU
Molecule needs Java 1.4 Structure


[1-22]:
1i2ka_PU6_1-22
CI=0.61


[23-39]:
1i2ka_PU6_23-39
CI=0.85


[40-64]:
1i2ka_PU6_40-64
CI=0.44


[65-83]:
1i2ka_PU6_65-83
CI=0.47


[84-109]:
1i2ka_PU6_84-109
CI=1.68


[110-125]:
1i2ka_PU6_110-125
CI=0.00


[126-141]:
1i2ka_PU6_126-141
CI=0.00


[142-159]:
1i2ka_PU6_142-159
CI=0.00


[160-176]:
1i2ka_PU6_160-176
CI=1.97


[177-219]:
1i2ka_PU6_177-219
CI=2.14


[220-229]:
1i2ka_PU6_220-229
CI=0.00


[230-253]:
1i2ka_PU6_230-253
CI=1.96


[254-269 ]:
1i2ka_PU6_254-269
CI=0.22


Final level 7

PU
Molecule needs Java 1.4 Structure


[1-22]:
1i2ka_PU_1-22
CI=0.61


[23-39]:
1i2ka_PU_23-39
CI=0.85


[40-64]:
1i2ka_PU_40-64
CI=0.44


[65-83]:
1i2ka_PU_65-83
CI=0.47


[84-109]:
1i2ka_PU_84-109
CI=1.68


[110-125]:
1i2ka_PU_110-125
CI=0.00


[126-141]:
1i2ka_PU_126-141
CI=0.00


[142-159]:
1i2ka_PU_142-159
CI=0.00


[160-176]:
1i2ka_PU_160-176
CI=1.97


[177-199]:
1i2ka_PU_177-199
CI=1.39


[200-219]:
1i2ka_PU_200-219
CI=0.19


[220-229]:
1i2ka_PU_220-229
CI=0.00


[230-253]:
1i2ka_PU_230-253
CI=1.96


[254-269 ]:
1i2ka_PU_254-269
CI=0.22