Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-159]:
1i36a_PU0_1-159
CI=5.06


[160-258 ]:
1i36a_PU0_160-258
CI=1.78


Level 1
PU
Molecule needs Java 1.4 Structure


[1-159]:
1i36a_PU1_1-159
CI=5.06


[160-175]:
1i36a_PU1_160-175
CI=0.00


[176-204]:
1i36a_PU1_176-204
CI=1.35


[205-258 ]:
1i36a_PU1_205-258
CI=1.20


Level 2
PU
Molecule needs Java 1.4 Structure


[1-64]:
1i36a_PU2_1-64
CI=3.54


[65-159]:
1i36a_PU2_65-159
CI=4.57


[160-175]:
1i36a_PU2_160-175
CI=0.00


[176-204]:
1i36a_PU2_176-204
CI=1.35


[205-258 ]:
1i36a_PU2_205-258
CI=1.20


Level 3
PU
Molecule needs Java 1.4 Structure


[1-64]:
1i36a_PU3_1-64
CI=3.54


[65-104]:
1i36a_PU3_65-104
CI=1.51


[105-159]:
1i36a_PU3_105-159
CI=4.72


[160-175]:
1i36a_PU3_160-175
CI=0.00


[176-204]:
1i36a_PU3_176-204
CI=1.35


[205-258 ]:
1i36a_PU3_205-258
CI=1.20


Level 4
PU
Molecule needs Java 1.4 Structure


[1-64]:
1i36a_PU4_1-64
CI=3.54


[65-104]:
1i36a_PU4_65-104
CI=1.51


[105-159]:
1i36a_PU4_105-159
CI=4.72


[160-175]:
1i36a_PU4_160-175
CI=0.00


[176-204]:
1i36a_PU4_176-204
CI=1.35


[205-222]:
1i36a_PU4_205-222
CI=0.10


[223-258 ]:
1i36a_PU4_223-258
CI=0.63


Level 5
PU
Molecule needs Java 1.4 Structure


[1-64]:
1i36a_PU5_1-64
CI=3.54


[65-104]:
1i36a_PU5_65-104
CI=1.51


[105-159]:
1i36a_PU5_105-159
CI=4.72


[160-175]:
1i36a_PU5_160-175
CI=0.00


[176-204]:
1i36a_PU5_176-204
CI=1.35


[205-222]:
1i36a_PU5_205-222
CI=0.10


[223-242]:
1i36a_PU5_223-242
CI=0.73


[243-258 ]:
1i36a_PU5_243-258
CI=0.23


Level 6
PU
Molecule needs Java 1.4 Structure


[1-16]:
1i36a_PU6_1-16
CI=0.23


[17-49]:
1i36a_PU6_17-49
CI=1.43


[50-64]:
1i36a_PU6_50-64
CI=0.12


[65-104]:
1i36a_PU6_65-104
CI=1.51


[105-159]:
1i36a_PU6_105-159
CI=4.72


[160-175]:
1i36a_PU6_160-175
CI=0.00


[176-204]:
1i36a_PU6_176-204
CI=1.35


[205-222]:
1i36a_PU6_205-222
CI=0.10


[223-242]:
1i36a_PU6_223-242
CI=0.73


[243-258 ]:
1i36a_PU6_243-258
CI=0.23


Level 7
PU
Molecule needs Java 1.4 Structure


[1-16]:
1i36a_PU7_1-16
CI=0.23


[17-49]:
1i36a_PU7_17-49
CI=1.43


[50-64]:
1i36a_PU7_50-64
CI=0.12


[65-88]:
1i36a_PU7_65-88
CI=0.31


[89-104]:
1i36a_PU7_89-104
CI=0.00


[105-159]:
1i36a_PU7_105-159
CI=4.72


[160-175]:
1i36a_PU7_160-175
CI=0.00


[176-204]:
1i36a_PU7_176-204
CI=1.35


[205-222]:
1i36a_PU7_205-222
CI=0.10


[223-242]:
1i36a_PU7_223-242
CI=0.73


[243-258 ]:
1i36a_PU7_243-258
CI=0.23


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-16]:
1i36a_PU_1-16
CI=0.23


[17-33]:
1i36a_PU_17-33
CI=0.11


[34-49]:
1i36a_PU_34-49
CI=0.11


[50-64]:
1i36a_PU_50-64
CI=0.12


[65-88]:
1i36a_PU_65-88
CI=0.31


[89-104]:
1i36a_PU_89-104
CI=0.00


[105-159]:
1i36a_PU_105-159
CI=4.72


[160-175]:
1i36a_PU_160-175
CI=0.00


[176-204]:
1i36a_PU_176-204
CI=1.35


[205-222]:
1i36a_PU_205-222
CI=0.10


[223-242]:
1i36a_PU_223-242
CI=0.73


[243-258 ]:
1i36a_PU_243-258
CI=0.23