Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-18]:
1i4ja_PU0_1-18
CI=0.00


[19-71]:
1i4ja_PU0_19-71
CI=2.15


[72-110 ]:
1i4ja_PU0_72-110
CI=2.81


Level 1
PU
Molecule needs Java 1.4 Structure


[1-18]:
1i4ja_PU1_1-18
CI=0.00


[19-51]:
1i4ja_PU1_19-51
CI=1.41


[52-71]:
1i4ja_PU1_52-71
CI=0.73


[72-110 ]:
1i4ja_PU1_72-110
CI=2.81


Level 2
PU
Molecule needs Java 1.4 Structure


[1-18]:
1i4ja_PU2_1-18
CI=0.00


[19-35]:
1i4ja_PU2_19-35
CI=0.64


[36-51]:
1i4ja_PU2_36-51
CI=0.68


[52-71]:
1i4ja_PU2_52-71
CI=0.73


[72-110 ]:
1i4ja_PU2_72-110
CI=2.81


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-18]:
1i4ja_PU_1-18
CI=0.00


[19-35]:
1i4ja_PU_19-35
CI=0.64


[36-51]:
1i4ja_PU_36-51
CI=0.68


[52-71]:
1i4ja_PU_52-71
CI=0.73


[72-94]:
1i4ja_PU_72-94
CI=0.99


[95-110 ]:
1i4ja_PU_95-110
CI=0.00