Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-85]:
1i4ma_PU0_1-85
CI=1.76


[86-108 ]:
1i4ma_PU0_86-108
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-17]:
1i4ma_PU1_1-17
CI=0.00


[18-39]:
1i4ma_PU1_18-39
CI=0.75


[40-85]:
1i4ma_PU1_40-85
CI=0.78


[86-108 ]:
1i4ma_PU1_86-108
CI=0.00


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-17]:
1i4ma_PU_1-17
CI=0.00


[18-39]:
1i4ma_PU_18-39
CI=0.75


[40-69]:
1i4ma_PU_40-69
CI=1.19


[70-85]:
1i4ma_PU_70-85
CI=0.00


[86-108 ]:
1i4ma_PU_86-108
CI=0.00