Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-120]:
1i6ia_PU0_1-120
CI=2.80


[121-239]:
1i6ia_PU0_121-239
CI=3.05


[240-333 ]:
1i6ia_PU0_240-333
CI=2.05


Level 1
PU
Molecule needs Java 1.4 Structure


[1-120]:
1i6ia_PU1_1-120
CI=2.80


[121-140]:
1i6ia_PU1_121-140
CI=0.17


[141-221]:
1i6ia_PU1_141-221
CI=3.03


[222-239]:
1i6ia_PU1_222-239
CI=1.97


[240-333 ]:
1i6ia_PU1_240-333
CI=2.05


Level 2
PU
Molecule needs Java 1.4 Structure


[1-66]:
1i6ia_PU2_1-66
CI=2.89


[67-120]:
1i6ia_PU2_67-120
CI=2.29


[121-140]:
1i6ia_PU2_121-140
CI=0.17


[141-221]:
1i6ia_PU2_141-221
CI=3.03


[222-239]:
1i6ia_PU2_222-239
CI=1.97


[240-333 ]:
1i6ia_PU2_240-333
CI=2.05


Level 3
PU
Molecule needs Java 1.4 Structure


[1-66]:
1i6ia_PU3_1-66
CI=2.89


[67-120]:
1i6ia_PU3_67-120
CI=2.29


[121-140]:
1i6ia_PU3_121-140
CI=0.17


[141-163]:
1i6ia_PU3_141-163
CI=1.86


[164-179]:
1i6ia_PU3_164-179
CI=1.97


[180-221]:
1i6ia_PU3_180-221
CI=0.65


[222-239]:
1i6ia_PU3_222-239
CI=1.97


[240-333 ]:
1i6ia_PU3_240-333
CI=2.05


Level 4
PU
Molecule needs Java 1.4 Structure


[1-66]:
1i6ia_PU4_1-66
CI=2.89


[67-120]:
1i6ia_PU4_67-120
CI=2.29


[121-140]:
1i6ia_PU4_121-140
CI=0.17


[141-163]:
1i6ia_PU4_141-163
CI=1.86


[164-179]:
1i6ia_PU4_164-179
CI=1.97


[180-200]:
1i6ia_PU4_180-200
CI=0.09


[201-221]:
1i6ia_PU4_201-221
CI=1.17


[222-239]:
1i6ia_PU4_222-239
CI=1.97


[240-333 ]:
1i6ia_PU4_240-333
CI=2.05


Level 5
PU
Molecule needs Java 1.4 Structure


[1-66]:
1i6ia_PU5_1-66
CI=2.89


[67-120]:
1i6ia_PU5_67-120
CI=2.29


[121-140]:
1i6ia_PU5_121-140
CI=0.17


[141-163]:
1i6ia_PU5_141-163
CI=1.86


[164-179]:
1i6ia_PU5_164-179
CI=1.97


[180-200]:
1i6ia_PU5_180-200
CI=0.09


[201-221]:
1i6ia_PU5_201-221
CI=1.17


[222-239]:
1i6ia_PU5_222-239
CI=1.97


[240-292]:
1i6ia_PU5_240-292
CI=1.59


[293-319]:
1i6ia_PU5_293-319
CI=0.62


[320-333 ]:
1i6ia_PU5_320-333
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-23]:
1i6ia_PU6_1-23
CI=0.08


[24-49]:
1i6ia_PU6_24-49
CI=2.41


[50-66]:
1i6ia_PU6_50-66
CI=1.40


[67-120]:
1i6ia_PU6_67-120
CI=2.29


[121-140]:
1i6ia_PU6_121-140
CI=0.17


[141-163]:
1i6ia_PU6_141-163
CI=1.86


[164-179]:
1i6ia_PU6_164-179
CI=1.97


[180-200]:
1i6ia_PU6_180-200
CI=0.09


[201-221]:
1i6ia_PU6_201-221
CI=1.17


[222-239]:
1i6ia_PU6_222-239
CI=1.97


[240-292]:
1i6ia_PU6_240-292
CI=1.59


[293-319]:
1i6ia_PU6_293-319
CI=0.62


[320-333 ]:
1i6ia_PU6_320-333
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-23]:
1i6ia_PU7_1-23
CI=0.08


[24-49]:
1i6ia_PU7_24-49
CI=2.41


[50-66]:
1i6ia_PU7_50-66
CI=1.40


[67-120]:
1i6ia_PU7_67-120
CI=2.29


[121-140]:
1i6ia_PU7_121-140
CI=0.17


[141-163]:
1i6ia_PU7_141-163
CI=1.86


[164-179]:
1i6ia_PU7_164-179
CI=1.97


[180-200]:
1i6ia_PU7_180-200
CI=0.09


[201-221]:
1i6ia_PU7_201-221
CI=1.17


[222-239]:
1i6ia_PU7_222-239
CI=1.97


[240-259]:
1i6ia_PU7_240-259
CI=0.36


[260-292]:
1i6ia_PU7_260-292
CI=1.84


[293-319]:
1i6ia_PU7_293-319
CI=0.62


[320-333 ]:
1i6ia_PU7_320-333
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-23]:
1i6ia_PU8_1-23
CI=0.08


[24-49]:
1i6ia_PU8_24-49
CI=2.41


[50-66]:
1i6ia_PU8_50-66
CI=1.40


[67-94]:
1i6ia_PU8_67-94
CI=0.72


[95-120]:
1i6ia_PU8_95-120
CI=1.75


[121-140]:
1i6ia_PU8_121-140
CI=0.17


[141-163]:
1i6ia_PU8_141-163
CI=1.86


[164-179]:
1i6ia_PU8_164-179
CI=1.97


[180-200]:
1i6ia_PU8_180-200
CI=0.09


[201-221]:
1i6ia_PU8_201-221
CI=1.17


[222-239]:
1i6ia_PU8_222-239
CI=1.97


[240-259]:
1i6ia_PU8_240-259
CI=0.36


[260-292]:
1i6ia_PU8_260-292
CI=1.84


[293-319]:
1i6ia_PU8_293-319
CI=0.62


[320-333 ]:
1i6ia_PU8_320-333
CI=0.00


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-23]:
1i6ia_PU_1-23
CI=0.08


[24-49]:
1i6ia_PU_24-49
CI=2.41


[50-66]:
1i6ia_PU_50-66
CI=1.40


[67-94]:
1i6ia_PU_67-94
CI=0.72


[95-120]:
1i6ia_PU_95-120
CI=1.75


[121-140]:
1i6ia_PU_121-140
CI=0.17


[141-163]:
1i6ia_PU_141-163
CI=1.86


[164-179]:
1i6ia_PU_164-179
CI=1.97


[180-200]:
1i6ia_PU_180-200
CI=0.09


[201-221]:
1i6ia_PU_201-221
CI=1.17


[222-239]:
1i6ia_PU_222-239
CI=1.97


[240-259]:
1i6ia_PU_240-259
CI=0.36


[260-276]:
1i6ia_PU_260-276
CI=1.30


[277-292]:
1i6ia_PU_277-292
CI=0.12


[293-319]:
1i6ia_PU_293-319
CI=0.62


[320-333 ]:
1i6ia_PU_320-333
CI=0.00