Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-117]:
1i7pa_PU0_1-117
CI=4.48


[118-272 ]:
1i7pa_PU0_118-272
CI=3.96


Level 1
PU
Molecule needs Java 1.4 Structure


[1-117]:
1i7pa_PU1_1-117
CI=4.48


[118-142]:
1i7pa_PU1_118-142
CI=2.88


[143-272 ]:
1i7pa_PU1_143-272
CI=3.85


Level 2
PU
Molecule needs Java 1.4 Structure


[1-117]:
1i7pa_PU2_1-117
CI=4.48


[118-142]:
1i7pa_PU2_118-142
CI=2.88


[143-179]:
1i7pa_PU2_143-179
CI=1.86


[180-223]:
1i7pa_PU2_180-223
CI=2.00


[224-272 ]:
1i7pa_PU2_224-272
CI=2.33


Level 3
PU
Molecule needs Java 1.4 Structure


[1-117]:
1i7pa_PU3_1-117
CI=4.48


[118-142]:
1i7pa_PU3_118-142
CI=2.88


[143-179]:
1i7pa_PU3_143-179
CI=1.86


[180-206]:
1i7pa_PU3_180-206
CI=0.48


[207-223]:
1i7pa_PU3_207-223
CI=2.18


[224-272 ]:
1i7pa_PU3_224-272
CI=2.33


Level 4
PU
Molecule needs Java 1.4 Structure


[1-43]:
1i7pa_PU4_1-43
CI=2.28


[44-67]:
1i7pa_PU4_44-67
CI=2.12


[68-117]:
1i7pa_PU4_68-117
CI=1.27


[118-142]:
1i7pa_PU4_118-142
CI=2.88


[143-179]:
1i7pa_PU4_143-179
CI=1.86


[180-206]:
1i7pa_PU4_180-206
CI=0.48


[207-223]:
1i7pa_PU4_207-223
CI=2.18


[224-272 ]:
1i7pa_PU4_224-272
CI=2.33


Level 5
PU
Molecule needs Java 1.4 Structure


[1-43]:
1i7pa_PU5_1-43
CI=2.28


[44-67]:
1i7pa_PU5_44-67
CI=2.12


[68-84]:
1i7pa_PU5_68-84
CI=0.87


[85-117]:
1i7pa_PU5_85-117
CI=0.75


[118-142]:
1i7pa_PU5_118-142
CI=2.88


[143-179]:
1i7pa_PU5_143-179
CI=1.86


[180-206]:
1i7pa_PU5_180-206
CI=0.48


[207-223]:
1i7pa_PU5_207-223
CI=2.18


[224-272 ]:
1i7pa_PU5_224-272
CI=2.33


Level 6
PU
Molecule needs Java 1.4 Structure


[1-17]:
1i7pa_PU6_1-17
CI=0.21


[18-43]:
1i7pa_PU6_18-43
CI=1.68


[44-67]:
1i7pa_PU6_44-67
CI=2.12


[68-84]:
1i7pa_PU6_68-84
CI=0.87


[85-117]:
1i7pa_PU6_85-117
CI=0.75


[118-142]:
1i7pa_PU6_118-142
CI=2.88


[143-179]:
1i7pa_PU6_143-179
CI=1.86


[180-206]:
1i7pa_PU6_180-206
CI=0.48


[207-223]:
1i7pa_PU6_207-223
CI=2.18


[224-272 ]:
1i7pa_PU6_224-272
CI=2.33


Level 7
PU
Molecule needs Java 1.4 Structure


[1-17]:
1i7pa_PU7_1-17
CI=0.21


[18-43]:
1i7pa_PU7_18-43
CI=1.68


[44-67]:
1i7pa_PU7_44-67
CI=2.12


[68-84]:
1i7pa_PU7_68-84
CI=0.87


[85-117]:
1i7pa_PU7_85-117
CI=0.75


[118-142]:
1i7pa_PU7_118-142
CI=2.88


[143-160]:
1i7pa_PU7_143-160
CI=0.20


[161-179]:
1i7pa_PU7_161-179
CI=0.29


[180-206]:
1i7pa_PU7_180-206
CI=0.48


[207-223]:
1i7pa_PU7_207-223
CI=2.18


[224-272 ]:
1i7pa_PU7_224-272
CI=2.33


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-17]:
1i7pa_PU_1-17
CI=0.21


[18-43]:
1i7pa_PU_18-43
CI=1.68


[44-67]:
1i7pa_PU_44-67
CI=2.12


[68-84]:
1i7pa_PU_68-84
CI=0.87


[85-117]:
1i7pa_PU_85-117
CI=0.75


[118-142]:
1i7pa_PU_118-142
CI=2.88


[143-160]:
1i7pa_PU_143-160
CI=0.20


[161-179]:
1i7pa_PU_161-179
CI=0.29


[180-206]:
1i7pa_PU_180-206
CI=0.48


[207-223]:
1i7pa_PU_207-223
CI=2.18


[224-244]:
1i7pa_PU_224-244
CI=0.09


[245-272 ]:
1i7pa_PU_245-272
CI=0.46