Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-64]:
1i9ga_PU0_1-64
CI=4.15


[65-264 ]:
1i9ga_PU0_65-264
CI=4.08


Level 1
PU
Molecule needs Java 1.4 Structure


[1-64]:
1i9ga_PU1_1-64
CI=4.15


[65-157]:
1i9ga_PU1_65-157
CI=3.61


[158-264 ]:
1i9ga_PU1_158-264
CI=3.36


Level 2
PU
Molecule needs Java 1.4 Structure


[1-64]:
1i9ga_PU2_1-64
CI=4.15


[65-157]:
1i9ga_PU2_65-157
CI=3.61


[158-221]:
1i9ga_PU2_158-221
CI=2.17


[222-249]:
1i9ga_PU2_222-249
CI=1.81


[250-264 ]:
1i9ga_PU2_250-264
CI=0.11


Level 3
PU
Molecule needs Java 1.4 Structure


[1-64]:
1i9ga_PU3_1-64
CI=4.15


[65-157]:
1i9ga_PU3_65-157
CI=3.61


[158-199]:
1i9ga_PU3_158-199
CI=2.47


[200-221]:
1i9ga_PU3_200-221
CI=0.42


[222-249]:
1i9ga_PU3_222-249
CI=1.81


[250-264 ]:
1i9ga_PU3_250-264
CI=0.11


Level 4
PU
Molecule needs Java 1.4 Structure


[1-64]:
1i9ga_PU4_1-64
CI=4.15


[65-93]:
1i9ga_PU4_65-93
CI=0.26


[94-157]:
1i9ga_PU4_94-157
CI=3.82


[158-199]:
1i9ga_PU4_158-199
CI=2.47


[200-221]:
1i9ga_PU4_200-221
CI=0.42


[222-249]:
1i9ga_PU4_222-249
CI=1.81


[250-264 ]:
1i9ga_PU4_250-264
CI=0.11


Level 5
PU
Molecule needs Java 1.4 Structure


[1-64]:
1i9ga_PU5_1-64
CI=4.15


[65-93]:
1i9ga_PU5_65-93
CI=0.26


[94-126]:
1i9ga_PU5_94-126
CI=2.77


[127-157]:
1i9ga_PU5_127-157
CI=1.34


[158-199]:
1i9ga_PU5_158-199
CI=2.47


[200-221]:
1i9ga_PU5_200-221
CI=0.42


[222-249]:
1i9ga_PU5_222-249
CI=1.81


[250-264 ]:
1i9ga_PU5_250-264
CI=0.11


Level 6
PU
Molecule needs Java 1.4 Structure


[1-23]:
1i9ga_PU6_1-23
CI=1.72


[24-43]:
1i9ga_PU6_24-43
CI=1.97


[44-64]:
1i9ga_PU6_44-64
CI=1.88


[65-93]:
1i9ga_PU6_65-93
CI=0.26


[94-126]:
1i9ga_PU6_94-126
CI=2.77


[127-157]:
1i9ga_PU6_127-157
CI=1.34


[158-199]:
1i9ga_PU6_158-199
CI=2.47


[200-221]:
1i9ga_PU6_200-221
CI=0.42


[222-249]:
1i9ga_PU6_222-249
CI=1.81


[250-264 ]:
1i9ga_PU6_250-264
CI=0.11


Level 7
PU
Molecule needs Java 1.4 Structure


[1-23]:
1i9ga_PU7_1-23
CI=1.72


[24-43]:
1i9ga_PU7_24-43
CI=1.97


[44-64]:
1i9ga_PU7_44-64
CI=1.88


[65-93]:
1i9ga_PU7_65-93
CI=0.26


[94-126]:
1i9ga_PU7_94-126
CI=2.77


[127-157]:
1i9ga_PU7_127-157
CI=1.34


[158-174]:
1i9ga_PU7_158-174
CI=0.00


[175-199]:
1i9ga_PU7_175-199
CI=0.30


[200-221]:
1i9ga_PU7_200-221
CI=0.42


[222-249]:
1i9ga_PU7_222-249
CI=1.81


[250-264 ]:
1i9ga_PU7_250-264
CI=0.11


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-23]:
1i9ga_PU_1-23
CI=1.72


[24-43]:
1i9ga_PU_24-43
CI=1.97


[44-64]:
1i9ga_PU_44-64
CI=1.88


[65-93]:
1i9ga_PU_65-93
CI=0.26


[94-110]:
1i9ga_PU_94-110
CI=0.10


[111-126]:
1i9ga_PU_111-126
CI=0.56


[127-157]:
1i9ga_PU_127-157
CI=1.34


[158-174]:
1i9ga_PU_158-174
CI=0.00


[175-199]:
1i9ga_PU_175-199
CI=0.30


[200-221]:
1i9ga_PU_200-221
CI=0.42


[222-249]:
1i9ga_PU_222-249
CI=1.81


[250-264 ]:
1i9ga_PU_250-264
CI=0.11