Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-82]:
1ia8a_PU0_1-82
CI=3.51


[83-272 ]:
1ia8a_PU0_83-272
CI=3.35


Level 1
PU
Molecule needs Java 1.4 Structure


[1-82]:
1ia8a_PU1_1-82
CI=3.51


[83-158]:
1ia8a_PU1_83-158
CI=2.69


[159-263]:
1ia8a_PU1_159-263
CI=2.51


[264-272 ]:
1ia8a_PU1_264-272
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-39]:
1ia8a_PU2_1-39
CI=3.74


[40-82]:
1ia8a_PU2_40-82
CI=1.78


[83-158]:
1ia8a_PU2_83-158
CI=2.69


[159-263]:
1ia8a_PU2_159-263
CI=2.51


[264-272 ]:
1ia8a_PU2_264-272
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-39]:
1ia8a_PU3_1-39
CI=3.74


[40-82]:
1ia8a_PU3_40-82
CI=1.78


[83-158]:
1ia8a_PU3_83-158
CI=2.69


[159-192]:
1ia8a_PU3_159-192
CI=1.79


[193-231]:
1ia8a_PU3_193-231
CI=1.41


[232-263]:
1ia8a_PU3_232-263
CI=1.12


[264-272 ]:
1ia8a_PU3_264-272
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-39]:
1ia8a_PU4_1-39
CI=3.74


[40-57]:
1ia8a_PU4_40-57
CI=0.10


[58-82]:
1ia8a_PU4_58-82
CI=1.98


[83-158]:
1ia8a_PU4_83-158
CI=2.69


[159-192]:
1ia8a_PU4_159-192
CI=1.79


[193-231]:
1ia8a_PU4_193-231
CI=1.41


[232-263]:
1ia8a_PU4_232-263
CI=1.12


[264-272 ]:
1ia8a_PU4_264-272
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-39]:
1ia8a_PU5_1-39
CI=3.74


[40-57]:
1ia8a_PU5_40-57
CI=0.10


[58-82]:
1ia8a_PU5_58-82
CI=1.98


[83-98]:
1ia8a_PU5_83-98
CI=0.33


[99-120]:
1ia8a_PU5_99-120
CI=0.00


[121-158]:
1ia8a_PU5_121-158
CI=2.31


[159-192]:
1ia8a_PU5_159-192
CI=1.79


[193-231]:
1ia8a_PU5_193-231
CI=1.41


[232-263]:
1ia8a_PU5_232-263
CI=1.12


[264-272 ]:
1ia8a_PU5_264-272
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-39]:
1ia8a_PU6_1-39
CI=3.74


[40-57]:
1ia8a_PU6_40-57
CI=0.10


[58-82]:
1ia8a_PU6_58-82
CI=1.98


[83-98]:
1ia8a_PU6_83-98
CI=0.33


[99-120]:
1ia8a_PU6_99-120
CI=0.00


[121-158]:
1ia8a_PU6_121-158
CI=2.31


[159-192]:
1ia8a_PU6_159-192
CI=1.79


[193-211]:
1ia8a_PU6_193-211
CI=0.68


[212-231]:
1ia8a_PU6_212-231
CI=0.18


[232-263]:
1ia8a_PU6_232-263
CI=1.12


[264-272 ]:
1ia8a_PU6_264-272
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-39]:
1ia8a_PU7_1-39
CI=3.74


[40-57]:
1ia8a_PU7_40-57
CI=0.10


[58-82]:
1ia8a_PU7_58-82
CI=1.98


[83-98]:
1ia8a_PU7_83-98
CI=0.33


[99-120]:
1ia8a_PU7_99-120
CI=0.00


[121-142]:
1ia8a_PU7_121-142
CI=1.10


[143-158]:
1ia8a_PU7_143-158
CI=0.35


[159-192]:
1ia8a_PU7_159-192
CI=1.79


[193-211]:
1ia8a_PU7_193-211
CI=0.68


[212-231]:
1ia8a_PU7_212-231
CI=0.18


[232-263]:
1ia8a_PU7_232-263
CI=1.12


[264-272 ]:
1ia8a_PU7_264-272
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-39]:
1ia8a_PU8_1-39
CI=3.74


[40-57]:
1ia8a_PU8_40-57
CI=0.10


[58-82]:
1ia8a_PU8_58-82
CI=1.98


[83-98]:
1ia8a_PU8_83-98
CI=0.33


[99-120]:
1ia8a_PU8_99-120
CI=0.00


[121-142]:
1ia8a_PU8_121-142
CI=1.10


[143-158]:
1ia8a_PU8_143-158
CI=0.35


[159-176]:
1ia8a_PU8_159-176
CI=0.30


[177-192]:
1ia8a_PU8_177-192
CI=0.00


[193-211]:
1ia8a_PU8_193-211
CI=0.68


[212-231]:
1ia8a_PU8_212-231
CI=0.18


[232-263]:
1ia8a_PU8_232-263
CI=1.12


[264-272 ]:
1ia8a_PU8_264-272
CI=0.00


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-19]:
1ia8a_PU_1-19
CI=0.00


[20-39]:
1ia8a_PU_20-39
CI=2.56


[40-57]:
1ia8a_PU_40-57
CI=0.10


[58-82]:
1ia8a_PU_58-82
CI=1.98


[83-98]:
1ia8a_PU_83-98
CI=0.33


[99-120]:
1ia8a_PU_99-120
CI=0.00


[121-142]:
1ia8a_PU_121-142
CI=1.10


[143-158]:
1ia8a_PU_143-158
CI=0.35


[159-176]:
1ia8a_PU_159-176
CI=0.30


[177-192]:
1ia8a_PU_177-192
CI=0.00


[193-211]:
1ia8a_PU_193-211
CI=0.68


[212-231]:
1ia8a_PU_212-231
CI=0.18


[232-263]:
1ia8a_PU_232-263
CI=1.12


[264-272 ]:
1ia8a_PU_264-272
CI=0.00