Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-20]:
1ia9a_PU0_1-20
CI=0.00


[21-276 ]:
1ia9a_PU0_21-276
CI=3.89


Level 1
PU
Molecule needs Java 1.4 Structure


[1-20]:
1ia9a_PU1_1-20
CI=0.00


[21-168]:
1ia9a_PU1_21-168
CI=3.75


[169-276 ]:
1ia9a_PU1_169-276
CI=2.86


Level 2
PU
Molecule needs Java 1.4 Structure


[1-20]:
1ia9a_PU2_1-20
CI=0.00


[21-125]:
1ia9a_PU2_21-125
CI=3.15


[126-148]:
1ia9a_PU2_126-148
CI=1.05


[149-168]:
1ia9a_PU2_149-168
CI=2.25


[169-276 ]:
1ia9a_PU2_169-276
CI=2.86


Level 3
PU
Molecule needs Java 1.4 Structure


[1-20]:
1ia9a_PU3_1-20
CI=0.00


[21-96]:
1ia9a_PU3_21-96
CI=3.88


[97-125]:
1ia9a_PU3_97-125
CI=0.39


[126-148]:
1ia9a_PU3_126-148
CI=1.05


[149-168]:
1ia9a_PU3_149-168
CI=2.25


[169-276 ]:
1ia9a_PU3_169-276
CI=2.86


Level 4
PU
Molecule needs Java 1.4 Structure


[1-20]:
1ia9a_PU4_1-20
CI=0.00


[21-53]:
1ia9a_PU4_21-53
CI=1.73


[54-96]:
1ia9a_PU4_54-96
CI=4.20


[97-125]:
1ia9a_PU4_97-125
CI=0.39


[126-148]:
1ia9a_PU4_126-148
CI=1.05


[149-168]:
1ia9a_PU4_149-168
CI=2.25


[169-276 ]:
1ia9a_PU4_169-276
CI=2.86


Level 5
PU
Molecule needs Java 1.4 Structure


[1-20]:
1ia9a_PU5_1-20
CI=0.00


[21-53]:
1ia9a_PU5_21-53
CI=1.73


[54-96]:
1ia9a_PU5_54-96
CI=4.20


[97-125]:
1ia9a_PU5_97-125
CI=0.39


[126-148]:
1ia9a_PU5_126-148
CI=1.05


[149-168]:
1ia9a_PU5_149-168
CI=2.25


[169-224]:
1ia9a_PU5_169-224
CI=2.53


[225-247]:
1ia9a_PU5_225-247
CI=1.86


[248-276 ]:
1ia9a_PU5_248-276
CI=0.39


Level 6
PU
Molecule needs Java 1.4 Structure


[1-20]:
1ia9a_PU6_1-20
CI=0.00


[21-37]:
1ia9a_PU6_21-37
CI=0.00


[38-53]:
1ia9a_PU6_38-53
CI=0.81


[54-96]:
1ia9a_PU6_54-96
CI=4.20


[97-125]:
1ia9a_PU6_97-125
CI=0.39


[126-148]:
1ia9a_PU6_126-148
CI=1.05


[149-168]:
1ia9a_PU6_149-168
CI=2.25


[169-224]:
1ia9a_PU6_169-224
CI=2.53


[225-247]:
1ia9a_PU6_225-247
CI=1.86


[248-276 ]:
1ia9a_PU6_248-276
CI=0.39


Level 7
PU
Molecule needs Java 1.4 Structure


[1-20]:
1ia9a_PU7_1-20
CI=0.00


[21-37]:
1ia9a_PU7_21-37
CI=0.00


[38-53]:
1ia9a_PU7_38-53
CI=0.81


[54-96]:
1ia9a_PU7_54-96
CI=4.20


[97-125]:
1ia9a_PU7_97-125
CI=0.39


[126-148]:
1ia9a_PU7_126-148
CI=1.05


[149-168]:
1ia9a_PU7_149-168
CI=2.25


[169-196]:
1ia9a_PU7_169-196
CI=0.99


[197-224]:
1ia9a_PU7_197-224
CI=1.75


[225-247]:
1ia9a_PU7_225-247
CI=1.86


[248-276 ]:
1ia9a_PU7_248-276
CI=0.39


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-20]:
1ia9a_PU_1-20
CI=0.00


[21-37]:
1ia9a_PU_21-37
CI=0.00


[38-53]:
1ia9a_PU_38-53
CI=0.81


[54-75]:
1ia9a_PU_54-75
CI=1.55


[76-96]:
1ia9a_PU_76-96
CI=2.05


[97-125]:
1ia9a_PU_97-125
CI=0.39


[126-148]:
1ia9a_PU_126-148
CI=1.05


[149-168]:
1ia9a_PU_149-168
CI=2.25


[169-196]:
1ia9a_PU_169-196
CI=0.99


[197-224]:
1ia9a_PU_197-224
CI=1.75


[225-247]:
1ia9a_PU_225-247
CI=1.86


[248-276 ]:
1ia9a_PU_248-276
CI=0.39