Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-16]:
1ibya_PU0_1-16
CI=0.00


[17-32]:
1ibya_PU0_17-32
CI=1.16


[33-112 ]:
1ibya_PU0_33-112
CI=5.00


Final level 1

PU
Molecule needs Java 1.4 Structure


[1-16]:
1ibya_PU_1-16
CI=0.00


[17-32]:
1ibya_PU_17-32
CI=1.16


[33-54]:
1ibya_PU_33-54
CI=0.08


[55-83]:
1ibya_PU_55-83
CI=2.29


[84-112 ]:
1ibya_PU_84-112
CI=2.49