Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-34]:
1ic2a_PU0_1-34
CI=0.00


[35-79 ]:
1ic2a_PU0_35-79
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-34]:
1ic2a_PU1_1-34
CI=0.00


[35-59]:
1ic2a_PU1_35-59
CI=0.00


[60-79 ]:
1ic2a_PU1_60-79
CI=0.00


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-18]:
1ic2a_PU_1-18
CI=0.00


[19-34]:
1ic2a_PU_19-34
CI=0.00


[35-59]:
1ic2a_PU_35-59
CI=0.00


[60-79 ]:
1ic2a_PU_60-79
CI=0.00