Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-101]:
1idpa_PU0_1-101
CI=2.59


[102-117]:
1idpa_PU0_102-117
CI=2.10


[118-147 ]:
1idpa_PU0_118-147
CI=3.30


Level 1
PU
Molecule needs Java 1.4 Structure


[1-16]:
1idpa_PU1_1-16
CI=0.00


[17-77]:
1idpa_PU1_17-77
CI=2.49


[78-101]:
1idpa_PU1_78-101
CI=2.60


[102-117]:
1idpa_PU1_102-117
CI=2.10


[118-147 ]:
1idpa_PU1_118-147
CI=3.30


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-16]:
1idpa_PU_1-16
CI=0.00


[17-32]:
1idpa_PU_17-32
CI=0.91


[33-58]:
1idpa_PU_33-58
CI=2.48


[59-77]:
1idpa_PU_59-77
CI=0.68


[78-101]:
1idpa_PU_78-101
CI=2.60


[102-117]:
1idpa_PU_102-117
CI=2.10


[118-147 ]:
1idpa_PU_118-147
CI=3.30