Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-63]:
1ifc0_PU0_1-63
CI=3.06


[64-108]:
1ifc0_PU0_64-108
CI=4.06


[109-131 ]:
1ifc0_PU0_109-131
CI=2.46


Level 1
PU
Molecule needs Java 1.4 Structure


[1-33]:
1ifc0_PU1_1-33
CI=0.62


[34-63]:
1ifc0_PU1_34-63
CI=3.75


[64-108]:
1ifc0_PU1_64-108
CI=4.06


[109-131 ]:
1ifc0_PU1_109-131
CI=2.46


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-33]:
1ifc0_PU_1-33
CI=0.62


[34-63]:
1ifc0_PU_34-63
CI=3.75


[64-84]:
1ifc0_PU_64-84
CI=2.41


[85-108]:
1ifc0_PU_85-108
CI=2.59


[109-131 ]:
1ifc0_PU_109-131
CI=2.46