Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-61]:
1ifra_PU0_1-61
CI=3.61


[62-88]:
1ifra_PU0_62-88
CI=3.77


[89-113 ]:
1ifra_PU0_89-113
CI=2.42


Level 1
PU
Molecule needs Java 1.4 Structure


[1-24]:
1ifra_PU1_1-24
CI=2.04


[25-61]:
1ifra_PU1_25-61
CI=3.68


[62-88]:
1ifra_PU1_62-88
CI=3.77


[89-113 ]:
1ifra_PU1_89-113
CI=2.42


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-24]:
1ifra_PU_1-24
CI=2.04


[25-41]:
1ifra_PU_25-41
CI=0.11


[42-61]:
1ifra_PU_42-61
CI=0.09


[62-88]:
1ifra_PU_62-88
CI=3.77


[89-113 ]:
1ifra_PU_89-113
CI=2.42