Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-28]:
1ig0a_PU0_1-28
CI=0.00


[29-221]:
1ig0a_PU0_29-221
CI=3.48


[222-317 ]:
1ig0a_PU0_222-317
CI=4.64


Level 1
PU
Molecule needs Java 1.4 Structure


[1-28]:
1ig0a_PU1_1-28
CI=0.00


[29-60]:
1ig0a_PU1_29-60
CI=1.11


[61-174]:
1ig0a_PU1_61-174
CI=2.56


[175-221]:
1ig0a_PU1_175-221
CI=2.52


[222-317 ]:
1ig0a_PU1_222-317
CI=4.64


Level 2
PU
Molecule needs Java 1.4 Structure


[1-28]:
1ig0a_PU2_1-28
CI=0.00


[29-60]:
1ig0a_PU2_29-60
CI=1.11


[61-116]:
1ig0a_PU2_61-116
CI=2.61


[117-174]:
1ig0a_PU2_117-174
CI=1.31


[175-221]:
1ig0a_PU2_175-221
CI=2.52


[222-317 ]:
1ig0a_PU2_222-317
CI=4.64


Level 3
PU
Molecule needs Java 1.4 Structure


[1-28]:
1ig0a_PU3_1-28
CI=0.00


[29-60]:
1ig0a_PU3_29-60
CI=1.11


[61-116]:
1ig0a_PU3_61-116
CI=2.61


[117-133]:
1ig0a_PU3_117-133
CI=0.11


[134-156]:
1ig0a_PU3_134-156
CI=0.88


[157-174]:
1ig0a_PU3_157-174
CI=0.11


[175-221]:
1ig0a_PU3_175-221
CI=2.52


[222-317 ]:
1ig0a_PU3_222-317
CI=4.64


Level 4
PU
Molecule needs Java 1.4 Structure


[1-28]:
1ig0a_PU4_1-28
CI=0.00


[29-60]:
1ig0a_PU4_29-60
CI=1.11


[61-116]:
1ig0a_PU4_61-116
CI=2.61


[117-133]:
1ig0a_PU4_117-133
CI=0.11


[134-156]:
1ig0a_PU4_134-156
CI=0.88


[157-174]:
1ig0a_PU4_157-174
CI=0.11


[175-221]:
1ig0a_PU4_175-221
CI=2.52


[222-249]:
1ig0a_PU4_222-249
CI=0.00


[250-287]:
1ig0a_PU4_250-287
CI=3.02


[288-317 ]:
1ig0a_PU4_288-317
CI=0.06


Level 5
PU
Molecule needs Java 1.4 Structure


[1-28]:
1ig0a_PU5_1-28
CI=0.00


[29-60]:
1ig0a_PU5_29-60
CI=1.11


[61-89]:
1ig0a_PU5_61-89
CI=0.91


[90-116]:
1ig0a_PU5_90-116
CI=1.48


[117-133]:
1ig0a_PU5_117-133
CI=0.11


[134-156]:
1ig0a_PU5_134-156
CI=0.88


[157-174]:
1ig0a_PU5_157-174
CI=0.11


[175-221]:
1ig0a_PU5_175-221
CI=2.52


[222-249]:
1ig0a_PU5_222-249
CI=0.00


[250-287]:
1ig0a_PU5_250-287
CI=3.02


[288-317 ]:
1ig0a_PU5_288-317
CI=0.06


Level 6
PU
Molecule needs Java 1.4 Structure


[1-28]:
1ig0a_PU6_1-28
CI=0.00


[29-60]:
1ig0a_PU6_29-60
CI=1.11


[61-89]:
1ig0a_PU6_61-89
CI=0.91


[90-116]:
1ig0a_PU6_90-116
CI=1.48


[117-133]:
1ig0a_PU6_117-133
CI=0.11


[134-156]:
1ig0a_PU6_134-156
CI=0.88


[157-174]:
1ig0a_PU6_157-174
CI=0.11


[175-201]:
1ig0a_PU6_175-201
CI=0.49


[202-221]:
1ig0a_PU6_202-221
CI=0.90


[222-249]:
1ig0a_PU6_222-249
CI=0.00


[250-287]:
1ig0a_PU6_250-287
CI=3.02


[288-317 ]:
1ig0a_PU6_288-317
CI=0.06


Final level 7

PU
Molecule needs Java 1.4 Structure


[1-28]:
1ig0a_PU_1-28
CI=0.00


[29-60]:
1ig0a_PU_29-60
CI=1.11


[61-89]:
1ig0a_PU_61-89
CI=0.91


[90-116]:
1ig0a_PU_90-116
CI=1.48


[117-133]:
1ig0a_PU_117-133
CI=0.11


[134-156]:
1ig0a_PU_134-156
CI=0.88


[157-174]:
1ig0a_PU_157-174
CI=0.11


[175-201]:
1ig0a_PU_175-201
CI=0.49


[202-221]:
1ig0a_PU_202-221
CI=0.90


[222-249]:
1ig0a_PU_222-249
CI=0.00


[250-266]:
1ig0a_PU_250-266
CI=0.00


[267-287]:
1ig0a_PU_267-287
CI=0.72


[288-317 ]:
1ig0a_PU_288-317
CI=0.06