Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-50]:
1ihra_PU0_1-50
CI=1.54


[51-73 ]:
1ihra_PU0_51-73
CI=0.00


Final level 1

PU
Molecule needs Java 1.4 Structure


[1-32]:
1ihra_PU_1-32
CI=1.73


[33-50]:
1ihra_PU_33-50
CI=0.00


[51-73 ]:
1ihra_PU_51-73
CI=0.00