Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-38]:
1iiba_PU0_1-38
CI=2.92


[39-76]:
1iiba_PU0_39-76
CI=2.34


[77-103 ]:
1iiba_PU0_77-103
CI=0.69


Level 1
PU
Molecule needs Java 1.4 Structure


[1-38]:
1iiba_PU1_1-38
CI=2.92


[39-55]:
1iiba_PU1_39-55
CI=0.32


[56-76]:
1iiba_PU1_56-76
CI=0.97


[77-103 ]:
1iiba_PU1_77-103
CI=0.69


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-17]:
1iiba_PU_1-17
CI=0.33


[18-38]:
1iiba_PU_18-38
CI=1.24


[39-55]:
1iiba_PU_39-55
CI=0.32


[56-76]:
1iiba_PU_56-76
CI=0.97


[77-103 ]:
1iiba_PU_77-103
CI=0.69