Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-259]:
1ijqa_PU0_1-259
CI=6.26


[260-308 ]:
1ijqa_PU0_260-308
CI=3.02


Level 1
PU
Molecule needs Java 1.4 Structure


[1-29]:
1ijqa_PU1_1-29
CI=3.41


[30-152]:
1ijqa_PU1_30-152
CI=5.83


[153-259]:
1ijqa_PU1_153-259
CI=4.73


[260-308 ]:
1ijqa_PU1_260-308
CI=3.02


Level 2
PU
Molecule needs Java 1.4 Structure


[1-29]:
1ijqa_PU2_1-29
CI=3.41


[30-70]:
1ijqa_PU2_30-70
CI=3.65


[71-152]:
1ijqa_PU2_71-152
CI=5.79


[153-259]:
1ijqa_PU2_153-259
CI=4.73


[260-308 ]:
1ijqa_PU2_260-308
CI=3.02


Level 3
PU
Molecule needs Java 1.4 Structure


[1-29]:
1ijqa_PU3_1-29
CI=3.41


[30-70]:
1ijqa_PU3_30-70
CI=3.65


[71-152]:
1ijqa_PU3_71-152
CI=5.79


[153-259]:
1ijqa_PU3_153-259
CI=4.73


[260-292]:
1ijqa_PU3_260-292
CI=2.53


[293-308 ]:
1ijqa_PU3_293-308
CI=2.07


Level 4
PU
Molecule needs Java 1.4 Structure


[1-29]:
1ijqa_PU4_1-29
CI=3.41


[30-70]:
1ijqa_PU4_30-70
CI=3.65


[71-152]:
1ijqa_PU4_71-152
CI=5.79


[153-197]:
1ijqa_PU4_153-197
CI=3.97


[198-259]:
1ijqa_PU4_198-259
CI=3.59


[260-292]:
1ijqa_PU4_260-292
CI=2.53


[293-308 ]:
1ijqa_PU4_293-308
CI=2.07


Level 5
PU
Molecule needs Java 1.4 Structure


[1-29]:
1ijqa_PU5_1-29
CI=3.41


[30-70]:
1ijqa_PU5_30-70
CI=3.65


[71-152]:
1ijqa_PU5_71-152
CI=5.79


[153-197]:
1ijqa_PU5_153-197
CI=3.97


[198-243]:
1ijqa_PU5_198-243
CI=3.69


[244-259]:
1ijqa_PU5_244-259
CI=0.00


[260-292]:
1ijqa_PU5_260-292
CI=2.53


[293-308 ]:
1ijqa_PU5_293-308
CI=2.07


Level 6
PU
Molecule needs Java 1.4 Structure


[1-29]:
1ijqa_PU6_1-29
CI=3.41


[30-70]:
1ijqa_PU6_30-70
CI=3.65


[71-120]:
1ijqa_PU6_71-120
CI=5.17


[121-152]:
1ijqa_PU6_121-152
CI=3.27


[153-197]:
1ijqa_PU6_153-197
CI=3.97


[198-243]:
1ijqa_PU6_198-243
CI=3.69


[244-259]:
1ijqa_PU6_244-259
CI=0.00


[260-292]:
1ijqa_PU6_260-292
CI=2.53


[293-308 ]:
1ijqa_PU6_293-308
CI=2.07


Level 7
PU
Molecule needs Java 1.4 Structure


[1-29]:
1ijqa_PU7_1-29
CI=3.41


[30-70]:
1ijqa_PU7_30-70
CI=3.65


[71-120]:
1ijqa_PU7_71-120
CI=5.17


[121-152]:
1ijqa_PU7_121-152
CI=3.27


[153-178]:
1ijqa_PU7_153-178
CI=2.68


[179-197]:
1ijqa_PU7_179-197
CI=2.36


[198-243]:
1ijqa_PU7_198-243
CI=3.69


[244-259]:
1ijqa_PU7_244-259
CI=0.00


[260-292]:
1ijqa_PU7_260-292
CI=2.53


[293-308 ]:
1ijqa_PU7_293-308
CI=2.07


Level 8
PU
Molecule needs Java 1.4 Structure


[1-29]:
1ijqa_PU8_1-29
CI=3.41


[30-51]:
1ijqa_PU8_30-51
CI=2.64


[52-70]:
1ijqa_PU8_52-70
CI=2.07


[71-120]:
1ijqa_PU8_71-120
CI=5.17


[121-152]:
1ijqa_PU8_121-152
CI=3.27


[153-178]:
1ijqa_PU8_153-178
CI=2.68


[179-197]:
1ijqa_PU8_179-197
CI=2.36


[198-243]:
1ijqa_PU8_198-243
CI=3.69


[244-259]:
1ijqa_PU8_244-259
CI=0.00


[260-292]:
1ijqa_PU8_260-292
CI=2.53


[293-308 ]:
1ijqa_PU8_293-308
CI=2.07


Level 9
PU
Molecule needs Java 1.4 Structure


[1-29]:
1ijqa_PU9_1-29
CI=3.41


[30-51]:
1ijqa_PU9_30-51
CI=2.64


[52-70]:
1ijqa_PU9_52-70
CI=2.07


[71-120]:
1ijqa_PU9_71-120
CI=5.17


[121-152]:
1ijqa_PU9_121-152
CI=3.27


[153-178]:
1ijqa_PU9_153-178
CI=2.68


[179-197]:
1ijqa_PU9_179-197
CI=2.36


[198-220]:
1ijqa_PU9_198-220
CI=2.46


[221-243]:
1ijqa_PU9_221-243
CI=2.48


[244-259]:
1ijqa_PU9_244-259
CI=0.00


[260-292]:
1ijqa_PU9_260-292
CI=2.53


[293-308 ]:
1ijqa_PU9_293-308
CI=2.07


Final level 10

PU
Molecule needs Java 1.4 Structure


[1-29]:
1ijqa_PU_1-29
CI=3.41


[30-51]:
1ijqa_PU_30-51
CI=2.64


[52-70]:
1ijqa_PU_52-70
CI=2.07


[71-87]:
1ijqa_PU_71-87
CI=2.32


[88-120]:
1ijqa_PU_88-120
CI=2.71


[121-152]:
1ijqa_PU_121-152
CI=3.27


[153-178]:
1ijqa_PU_153-178
CI=2.68


[179-197]:
1ijqa_PU_179-197
CI=2.36


[198-220]:
1ijqa_PU_198-220
CI=2.46


[221-243]:
1ijqa_PU_221-243
CI=2.48


[244-259]:
1ijqa_PU_244-259
CI=0.00


[260-292]:
1ijqa_PU_260-292
CI=2.53


[293-308 ]:
1ijqa_PU_293-308
CI=2.07