Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-35]:
1ikop_PU0_1-35
CI=2.01


[36-129]:
1ikop_PU0_36-129
CI=3.97


[130-141 ]:
1ikop_PU0_130-141
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-35]:
1ikop_PU1_1-35
CI=2.01


[36-81]:
1ikop_PU1_36-81
CI=2.61


[82-102]:
1ikop_PU1_82-102
CI=1.60


[103-129]:
1ikop_PU1_103-129
CI=2.17


[130-141 ]:
1ikop_PU1_130-141
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-35]:
1ikop_PU2_1-35
CI=2.01


[36-54]:
1ikop_PU2_36-54
CI=0.87


[55-81]:
1ikop_PU2_55-81
CI=0.20


[82-102]:
1ikop_PU2_82-102
CI=1.60


[103-129]:
1ikop_PU2_103-129
CI=2.17


[130-141 ]:
1ikop_PU2_130-141
CI=0.00


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-17]:
1ikop_PU_1-17
CI=0.31


[18-35]:
1ikop_PU_18-35
CI=0.00


[36-54]:
1ikop_PU_36-54
CI=0.87


[55-81]:
1ikop_PU_55-81
CI=0.20


[82-102]:
1ikop_PU_82-102
CI=1.60


[103-129]:
1ikop_PU_103-129
CI=2.17


[130-141 ]:
1ikop_PU_130-141
CI=0.00